Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_D07
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0543 - 7039139-7039573                                           29   6.3  
03_05_0812 + 27890030-27890219,27890618-27890916,27891603-278918...    29   6.3  
11_08_0064 - 28127955-28128860                                         28   8.4  
07_03_1243 + 25134422-25135201                                         28   8.4  

>04_01_0543 - 7039139-7039573
          Length = 144

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 436 GFMSPMSPPEMKPDTAMLDGFRDDSTXXXXXXXXXXXXXLSGSKHLCSIC 585
           G  SP+ PP + P TA L G R  +T             L G+ + C  C
Sbjct: 9   GGRSPLVPPPLSPPTAPLGGSRIVTTGHLQAALAMVGQPLDGNDNGCHRC 58


>03_05_0812 +
           27890030-27890219,27890618-27890916,27891603-27891840,
           27892098-27892433,27892522-27892607,27892703-27892810,
           27892918-27893225,27893304-27893567,27893660-27894431
          Length = 866

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = -2

Query: 246 PRSTWPHTNILTSL*THCTSVTASVNCQNLHDHNTIMKRDGHDQFTPVLMNI 91
           P     HT+++T+   H  S    +  Q   D N +   D HD+F P L+++
Sbjct: 393 PSKFGDHTSMITA--AHIGSNLEGLTVQQALDSNRLYILDHHDRFMPFLIDV 442


>11_08_0064 - 28127955-28128860
          Length = 301

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 393 PNVELDIQWLNIESGFYVAYVTARNEARYGDARRFPRRLDAA 518
           P  E    W+N ES +Y     A+  + YG A  + R  D A
Sbjct: 247 PAEETAADWINPESLYYAVMQRAQTASNYGGAMLWDRGADKA 288


>07_03_1243 + 25134422-25135201
          Length = 259

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
 Frame = +1

Query: 556 SGSKHLCSICGDRASG-KHYGVYSC-----EGCKGFFKRTV 660
           S S+H+C IC  + SG   Y   +C     E C  +FK T+
Sbjct: 24  SASRHVCDICEAKLSGLVGYRCNACDFDIHEACADYFKETI 64


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,236,596
Number of Sequences: 37544
Number of extensions: 373055
Number of successful extensions: 883
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)