Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_D01
(867 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0481 + 29361542-29361669,29362091-29362341,29362820-293630... 74 2e-13
06_02_0233 + 13315579-13316046 33 0.22
04_03_0241 - 13243938-13244453,13244538-13246334 33 0.30
02_01_0256 + 1680240-1680485,1680950-1681024,1681527-1681776,168... 31 0.90
02_01_0099 + 726576-727105,727899-728048,728510-728635,728726-72... 31 1.2
01_06_1442 + 37396505-37396960 31 1.2
01_06_1428 - 37301697-37302175,37302300-37302471,37302570-373034... 30 2.8
05_01_0500 - 4171090-4171191,4171989-4172061,4172376-4172701,417... 29 3.6
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 29 4.8
01_03_0260 - 14323503-14323603,14323751-14323990,14324212-143242... 29 4.8
01_01_0499 - 3675303-3675484,3676888-3676982,3677046-3677096,367... 29 4.8
>02_05_0481 + 29361542-29361669,29362091-29362341,29362820-29363002,
29363099-29363206,29363583-29363697,29363781-29364819,
29364904-29365014,29365268-29365326,29366601-29366763,
29367162-29367435,29367530-29367680,29367766-29367877,
29367978-29368143,29368261-29368331,29368474-29368565,
29368721-29368883,29369134-29369205,29369236-29369263,
29369519-29369910,29369991-29370106,29370201-29370498,
29370820-29371139,29371332-29371590,29371985-29372302,
29372423-29372527,29372648-29372776,29374001-29374381,
29374467-29374604,29374949-29375185,29375264-29375569
Length = 2094
Score = 73.7 bits (173), Expect = 2e-13
Identities = 50/132 (37%), Positives = 70/132 (53%), Gaps = 12/132 (9%)
Frame = +1
Query: 451 IRSRCLAEG-RLFEDPEFPAVDRSLYY---KESLDRPIT--WFRPGEI------SDNPQL 594
+R +A+G R F D EFP DRSL+ SL + W RP +I S P L
Sbjct: 1627 VREALIAKGERNFTDQEFPPDDRSLFVDPMNPSLKLQVVSEWMRPSDIAKEVSISSQPCL 1686
Query: 595 FVEGYSRFDVQQGELGDCWLLAAVANLTLHRKLFFQVVPDDQSFDEDYAGVFHFRFWQYG 774
F + DV QG LGDCW L+AVA LT ++ ++ + ++E+ G++ RF G
Sbjct: 1687 FSGSVNSSDVCQGRLGDCWFLSAVAVLTEMARISEVIITPE--YNEE--GIYTVRFCIQG 1742
Query: 775 RWVDVVIDDRLP 810
WV VV+DD +P
Sbjct: 1743 EWVAVVVDDWIP 1754
>06_02_0233 + 13315579-13316046
Length = 155
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 775 ARTARNGNGRRPHNLHRNSDHRVRLGRITCDEVSSWQRQPTANNR 641
+RTA G GRRPH GR++ + S WQR+P R
Sbjct: 55 SRTASRGRGRRPHPAGTAVFGGGVGGRLSAERRSRWQRRPARRER 99
>04_03_0241 - 13243938-13244453,13244538-13246334
Length = 770
Score = 33.1 bits (72), Expect = 0.30
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = -2
Query: 677 VKLATAANSQQ---SPNSPCWTSKRL*PSTKS*GLSLISPGLNQV 552
+++A AA +++ SP SPCWT+ L + K+ + L SPG N V
Sbjct: 544 MEVAVAAATEEPLLSPQSPCWTAVHLPAANKADTIVLQSPGQNIV 588
>02_01_0256 +
1680240-1680485,1680950-1681024,1681527-1681776,
1681910-1681995,1682669-1682771,1683490-1683602,
1684259-1684351
Length = 321
Score = 31.5 bits (68), Expect = 0.90
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 251 KLPLPISGSELPSPRSLFKNPLTAAAAFAVLCQPQP 144
+ P+P+S S L LF+N TA AA A +P+P
Sbjct: 21 RAPVPVSSSSLLPASPLFQNIATATAAAAAARRPRP 56
>02_01_0099 +
726576-727105,727899-728048,728510-728635,728726-729714,
729776-729818,730101-730218,730743-730853
Length = 688
Score = 31.1 bits (67), Expect = 1.2
Identities = 24/88 (27%), Positives = 40/88 (45%)
Frame = -1
Query: 681 KCQVGNGSQQPTIAQLSLLDVEATVAFDEKLRVVADFPRSEPSDGPVQALLVVEAAVHGR 502
+ VG+G P + ++ EA V + ++ + RS P VVEAA HG+
Sbjct: 85 EANVGSGDSSPAVR----VEEEAEVEAEAEVGTAVEPQRSGTLASPTD---VVEAAQHGQ 137
Query: 501 KLGVFEESTFS*APRSYVFEVLIRSRTE 418
+ +S + +PRSY V+ + E
Sbjct: 138 RQQQASQSQQTPSPRSYAAAVVNKREDE 165
>01_06_1442 + 37396505-37396960
Length = 151
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/32 (37%), Positives = 23/32 (71%)
Frame = +2
Query: 269 AKMMLRLVVSSCILLCRLRNMRAGLLRRWWKR 364
A+M+L L +++ +++ L + A L+RRWW+R
Sbjct: 5 ARMVLALALTAGVIVALLSLLVAVLVRRWWRR 36
>01_06_1428 -
37301697-37302175,37302300-37302471,37302570-37303403,
37303847-37304012,37304334-37304573,37304765-37304905,
37305623-37305735,37306549-37306614,37307242-37307480,
37307615-37307897
Length = 910
Score = 29.9 bits (64), Expect = 2.8
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 248 LPLPISGSELPS--PRSLFKNPLTAAAAFAVLCQPQP 144
LP+P S ++ PS L +NP TAAAA A + +P
Sbjct: 527 LPVPESATDFPSLLEHELNRNPWTAAAATATASEHEP 563
>05_01_0500 -
4171090-4171191,4171989-4172061,4172376-4172701,
4173164-4173555,4174521-4174853,4177118-4177209,
4178052-4178111,4178760-4178903,4180142-4180213,
4180345-4180510,4180776-4180923
Length = 635
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/46 (30%), Positives = 28/46 (60%)
Frame = -1
Query: 690 LAMKCQVGNGSQQPTIAQLSLLDVEATVAFDEKLRVVADFPRSEPS 553
+A+ C + N Q+P++A+++ + E+ + EK + D RS+PS
Sbjct: 502 IALLCTMYNPDQRPSMAEIAGMLQESDGSVVEKWETLKDAERSKPS 547
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -2
Query: 836 GGHQFPSYVGRRSSMTTSTQRPYCQKRKWKTP 741
G + YV S T ST P K+KWK P
Sbjct: 284 GQYHCSGYVSEWSKCTYSTTEPVRSKKKWKIP 315
>01_03_0260 -
14323503-14323603,14323751-14323990,14324212-14324275,
14324349-14324654,14324841-14325055,14325551-14325845,
14325965-14326129,14326324-14327352,14333553-14333814,
14334135-14334631,14338714-14340123
Length = 1527
Score = 29.1 bits (62), Expect = 4.8
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +1
Query: 40 RRSNAFKCGRVTARNRL*KCSDEMFNYYPKNFKANGWGWHRTANAAAAVKG 192
RR+N ++ +T R++ K ++EM NY + K W H +A A +G
Sbjct: 505 RRNNRYQFRLMTERDKRMKATNEMLNYM-RVIKFQAWEEHFSARIEAFRRG 554
>01_01_0499 -
3675303-3675484,3676888-3676982,3677046-3677096,
3677191-3677270,3677423-3677593,3677836-3677937,
3678092-3678244,3678392-3678523,3678702-3678788,
3678987-3679126,3679246-3679660
Length = 535
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 311 AGYN-LTPLNEASSSLGSLGYKLPLPISGSELPSPRSLFKNPLTAAAAFA 165
AG+N TPL A S GS+G+ L SG++ P L + P+ AA A
Sbjct: 222 AGFNGATPLLLACSRTGSIGFIKCLVESGADPNIPDELDRLPIEIAAIHA 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,833,804
Number of Sequences: 37544
Number of extensions: 536457
Number of successful extensions: 1560
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1557
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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