Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_C21
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    29   0.66 
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    29   1.2  
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    27   3.5  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   4.7  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.7  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 242 VRVHRANTGRSSDELDRQTTELERR 316
           +R H+ + GR+  ELDR+ T+L++R
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQR 42


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 1/54 (1%)
 Frame = +3

Query: 672 GGXLPLXXSXXSFPXTPPXXPPGGPX-PVSXXGXPRXXPPGLXXPXGPXXPXXG 830
           G   PL  +  + P  P    PG P  P      P   PPG+  P G   P  G
Sbjct: 488 GTSAPLPPTTFAPPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPG 541


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 166 YVARSESIMRDSDVAFSHSAALAIAQVRRNGNK 68
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +3

Query: 684  PLXXSXXSFPXTPPXXPPGGPXPVSXXGXPRXXPPGLXXPXGPXXPXXG 830
            P   S  + P  P   PP    P    G P   PP L     P  P  G
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNPG 1747


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 733 PXAGRXPXPPXVXPXPXLXGXPXRXAPXPPXPGLXGXTXFXXPXP 867
           P     P PP   P P + G P    P PP PG+ G      P P
Sbjct: 744 PAPAPIPVPP---PAPIMGGPP----PPPPPPGVAGAGPPPPPPP 781



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/49 (30%), Positives = 18/49 (36%)
 Frame = +1

Query: 721 PRXHPXAGRXPXPPXVXPXPXLXGXPXRXAPXPPXPGLXGXTXFXXPXP 867
           P   P  G  P PP   P P + G      P PP     G + +  P P
Sbjct: 752 PPPAPIMGGPPPPP---PPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,018,028
Number of Sequences: 5004
Number of extensions: 58411
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)