Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_C16
(855 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 30 0.48
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 29 1.1
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 1.1
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster... 27 3.4
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 27 4.5
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 27 4.5
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos... 26 5.9
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 7.8
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe... 26 7.8
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 29.9 bits (64), Expect = 0.48
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Frame = -3
Query: 649 PXXRXRIGAEREEFSXXRSAASXCDMVDSQKSSIAFQDASLPSIV--ATTRGSESSSPMT 476
P +I A+ ++F+ AAS S SS+ S S +TT S SSS +
Sbjct: 95 PGRPEQIYAQSQQFNIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSS 154
Query: 475 ATRAARCSSN 446
++ +++ SS+
Sbjct: 155 SSSSSKSSSS 164
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 28.7 bits (61), Expect = 1.1
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = -2
Query: 350 KEVPAKTPMAGQHLRQPE--GEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQ 186
+ +P+K P GQH RQ + + H +R++ T TE G+ RQ + P Q
Sbjct: 678 ESIPSKQPTEGQHARQESLPSQQTTETKH-LRKESTPSKQPTE-GQHTRQESLPSQQ 732
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = -2
Query: 179 PPRVEPPRSNYTFAGAPFPPRAEVATPP 96
PP PPRSN P PP+ A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363
>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
type|Schizosaccharomyces pombe|chr 1|||Manual
Length = 480
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 457 NAPPSSRSLERNSRCRASWLRCSAATRPGRRC 552
N P R+ RCR +RC+ + PG+ C
Sbjct: 5 NTGPRRRTAVACDRCRRRKIRCTGSDIPGQPC 36
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -3
Query: 565 SQKSSIAFQDASLPSIVATTRGSESSSPMTATRAARCSSNP 443
S + ++AFQ L +++ R + SS+P T R++ NP
Sbjct: 218 SPEDTVAFQSVELQKVISNNRLNSSSTPPT-PRSSSSIFNP 257
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.6 bits (56), Expect = 4.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 580 CDMVDSQKSSIAFQDASLPSIVATTRGSESSS 485
CDM+D+Q +A S S + RG++S+S
Sbjct: 1063 CDMMDAQVRDLANAAESQESFYSKARGNDSTS 1094
>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -2
Query: 332 TPMAGQHLRQPEGEASAVAAHPVREDRTDRLDGTEAGRRVRQAARPRLQHGPPRVEPPRS 153
TP+ +HL+ + P+ + + D D Q P++Q R EP S
Sbjct: 104 TPLNNKHLKSQD--------QPLSDSQLDTGDSPATSETTVQDYNPQVQ-SYCRPEPLSS 154
Query: 152 NYTFAGAPFPP 120
N+ + PFPP
Sbjct: 155 NHVRSCPPFPP 165
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 7.8
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 7/80 (8%)
Frame = -2
Query: 302 PEGEASAVAAH--PVREDRTDRLDGTEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 144
P AS + ++ PV E + +G R RQ R R P PRV P Y
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270
Query: 143 FAGAPFPPRAEVATPPVIGS 84
+PP A P GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290
>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +2
Query: 584 GGGGXXXGKLFPFRTDPSPSXRGPEAG 664
GGG G PF+ D S G EAG
Sbjct: 526 GGGSNSIGMFSPFKADKSVMMLGCEAG 552
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,766
Number of Sequences: 5004
Number of extensions: 45920
Number of successful extensions: 187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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