Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_C15
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    28   1.9  
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    27   4.5  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   5.9  
SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces po...    26   7.8  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    26   7.8  

>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 448 YICQRITQVS*GQL--SEDRNLAWSKRAKAGLIQMFSTHRDCESTAY 582
           Y+C  +  +S G L  SED ++ W    K GLI+ F    + E+  Y
Sbjct: 127 YVCPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDY 173


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 600 LYXKGSIGRAFAVPMRTEHLD-QASFCPFAPREVSVLAELALGHLR-YSLTDV-PPQSNS 430
           L+  GS G  F+   RT  LD +        + V++L   ++ + + Y+L  + PP +  
Sbjct: 125 LFMVGSAGPLFSSTARTSRLDSRLPDGGIIAKPVALLPTPSVANSQEYTLDKLSPPSTAK 184

Query: 429 PPGSVLE 409
           PP SV+E
Sbjct: 185 PPASVIE 191


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 621 WHXLXKTLYXKGSIGRAFAVPMRTEH 544
           +H + + L   GSI   FAVP++ EH
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEH 423


>SPAC13G6.15c ||SPAC24B11.04c|calcipressin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
 Frame = +1

Query: 586 SFXIKSFXQXVPXKLPQG*LACGSQXFIXTLLFDPS----MSALPIIXKPKFXKRWIVPP 753
           S+  K+  +    K   G L  G Q     +L DP+    +S    +  PKF K W++ P
Sbjct: 39  SYNDKAVEEDTLKKSSTGSLPSGQQVHCQYVLDDPNHVEGISVDQSLQVPKFEKNWLISP 98


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 115 SNYDSLKAWENQRGKKTLLSLTLV 186
           +N   +K W NQRG+  L S+ L+
Sbjct: 199 TNKSEVKHWHNQRGEGKLFSVNLL 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,795
Number of Sequences: 5004
Number of extensions: 63828
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)