Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_C10
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.1  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    28   2.0  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   2.0  
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom...    27   3.4  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   7.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -2

Query: 533 PPRVEPPRSNYTFAGAPFPPRAEVATPP 450
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 25/78 (32%), Positives = 32/78 (41%), Gaps = 7/78 (8%)
 Frame = -2

Query: 518 PPRSNYTFAGAPFP-------PRAEVATPPVIGSERLRLQVPGWRPGEQARRLEGDGAVS 360
           PP SNY  A  P+        P++  A PP   S R R+  P + PG    +    G   
Sbjct: 98  PPSSNYNTAKPPYQTSQFYARPQSSYAPPP---SGRPRISYP-YPPGYMCYKCHNTGYKD 153

Query: 359 SDRPDRDRALRTSQRGDV 306
           S RP    A R  +  DV
Sbjct: 154 SGRPCGRCARRFGRSYDV 171


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 267  YGAPVWCHALTRQNVAALRRPQRAIAVRAIRG 362
            YG    C  LT +N++A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042



 Score = 25.8 bits (54), Expect = 7.9
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
 Frame = -2

Query: 656 PEGEASAVAAH--PVRENRADRLDGSEAGR---RVRQAARPRLQHGP--PRVEPPRSNYT 498
           P   AS + ++  PV E      + + +G    R RQ  R R    P  PRV  P   Y 
Sbjct: 211 PASAASEIISNKDPVVEPTHSASNAANSGSNTIRARQTTRTRSNTLPWSPRVFGPTLGYN 270

Query: 497 FAGAPFPPRAEVATPPVIGS 438
                +PP    A P   GS
Sbjct: 271 TPPFGYPPTTSSALPNASGS 290


>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 286

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 349 GRSEDTAPSPSRRRACSPGRHPGTWR-RRRSLPITGGVATSALGGKGAPAKV*FERGGST 525
           G+  D  P PS  R C    H G+ +   +   +TGG +     G G  A V F R GS 
Sbjct: 14  GKHADLDPEPSLLRYCDGRVHVGSGKLAEKKTLLTGGDS-----GIGKAAAVMFAREGSD 68

Query: 526 LGGPC 540
           L   C
Sbjct: 69  LVISC 73


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = -2

Query: 410 WRPGEQARRLEGDGAVSSDRPDRDRALRTSQRGDVLAGQGVAPYGRAV*CHRPHH 246
           W       R   + A + DR + +R LRT   G  +  +     G+ V    P H
Sbjct: 476 WIRHRAVARAREEDADALDRKEEERELRTRGEGATVETENYVENGKLVTSEMPQH 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,537,176
Number of Sequences: 5004
Number of extensions: 45741
Number of successful extensions: 183
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)