Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_C09
         (851 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   0.88 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   4.7  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   6.2  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   8.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.2  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.2  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 0.88
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 270 YSKKKHYADQNTSSGTPQERECSIRKSCNNVSVTSMEDLSH 392
           YS K+H+ D++  S T    E   R+     S+T+ + L H
Sbjct: 19  YSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQH 59


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = -1

Query: 101 LSNFNQYVQPSLNHT 57
           LSN+N+ ++P +N+T
Sbjct: 42  LSNYNRLIRPVMNNT 56


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 261 CSKYSKKKHYADQNTSSGTPQERECSI 341
           CSK S K+H AD++      +E  C I
Sbjct: 16  CSKASLKRHVADKHAE--RQEEYRCVI 40


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 556 TDPLLRSKFHLRFALALISCNSLLR 482
           ++  + SKF L F   L+S N LLR
Sbjct: 216 SESTIDSKFGLGFTTDLLSYNILLR 240


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 17  LALAWCTYYILVTL 58
           + LAW  +Y+LV+L
Sbjct: 117 IILAWALFYLLVSL 130


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 17  LALAWCTYYILVTL 58
           + LAW  +Y+LV+L
Sbjct: 170 IILAWALFYLLVSL 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,500
Number of Sequences: 438
Number of extensions: 4649
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)