Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_C04
(865 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 33 0.052
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 31 0.16
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 29 1.1
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 2.0
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 28 2.0
SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPCC63.03 |||DNAJ domain protein, DNAJC11 family|Schizosaccharom... 27 3.4
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 27 4.5
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 26 6.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 7.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 7.9
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 33.1 bits (72), Expect = 0.052
Identities = 15/62 (24%), Positives = 36/62 (58%)
Frame = +3
Query: 405 EEEDERLKQRPADIDADVRGMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLQRI 584
EE++E + + D+ D + ME +R+ + +++LF + + + +++ + A LL+ I
Sbjct: 517 EEDEEDVDEDELDLMTDEQRMEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEI 576
Query: 585 KE 590
+E
Sbjct: 577 EE 578
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 31.5 bits (68), Expect = 0.16
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
Frame = +1
Query: 415 TSA*SSVRPTSTPMSAE-WNAGSASKLSCPRSCSAKNWNGSSTSRCTRAATLRSCRGSRR 591
TSA S+ T+TP S+ ++ S+S S P S S + SS S +++ S
Sbjct: 137 TSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSASSSGSISS 196
Query: 592 WSAGDCTPEASGVLAAFXRSTTXEVSKA*G 681
A + ++ ++ F STT S A G
Sbjct: 197 ADAKTVSASSNSTISGFSTSTTSASSSAAG 226
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 28.7 bits (61), Expect = 1.1
Identities = 25/87 (28%), Positives = 43/87 (49%)
Frame = +1
Query: 415 TSA*SSVRPTSTPMSAEWNAGSASKLSCPRSCSAKNWNGSSTSRCTRAATLRSCRGSRRW 594
+S +SV PTS+ ++ W+ S+S++ + SA GSSTS A+ S S
Sbjct: 939 SSVAASVTPTSSSSASSWS--SSSEVDPSTAASA---TGSSTSSIATASVSGSSTSSVAT 993
Query: 595 SAGDCTPEASGVLAAFXRSTTXEVSKA 675
++ + +S A+ S+T V+ A
Sbjct: 994 ASATDSSTSSIAAASVTGSSTSSVATA 1020
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.9 bits (59), Expect = 2.0
Identities = 19/47 (40%), Positives = 21/47 (44%)
Frame = -2
Query: 438 PDAASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSSKTWVSNP 298
P + SSA LP + S SSLS S P LSS T S P
Sbjct: 141 PSSVSSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLSSSTSSSQP 187
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 505 FEDMRASTRFRRSIPRTSASMSAGRCFK 422
F+DMR TR R+SIP S + A + F+
Sbjct: 109 FDDMRWYTRRRKSIPNLSIKLYAFQLFR 136
>SPAC6G9.15c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 27.1 bits (57), Expect = 3.4
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
Frame = +3
Query: 366 SETIPNGTGPLSTEEEDERLKQ--RPADIDADVRGMERRKRVEALMSSKLFREELERVLD 539
S T+P G G S + E + P D D+ + E L +SKL E + L
Sbjct: 78 SPTLPPGFGMASDDSEASLAENDLHPLDNDSTRTSKTLKNSSEVLTASKLTDEGNSKPLL 137
Query: 540 QQMHEGGDAPLLQRIKEMVGG 602
++ +P+L K+++ G
Sbjct: 138 EEGEVAVSSPILLDSKDVIMG 158
>SPCC63.03 |||DNAJ domain protein, DNAJC11
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 642
Score = 27.1 bits (57), Expect = 3.4
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +3
Query: 456 VRGMERRKRVEALMSSKLFREELERVLDQQMHEGG 560
++ + RK+V A+ + KL +E +E+ +M +GG
Sbjct: 484 LKDSQERKKVSAIRAVKLMKEIVEKKQKLEMEKGG 518
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 26.6 bits (56), Expect = 4.5
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Frame = -1
Query: 817 LXLRPVLXRA--RYLPXSXPVVVQTKQIHQPVHGGQLAXVVXXPPFSYPM---PSIP 662
L + P+ ++ RY P +Q + + P+ PPFSYP+ P+IP
Sbjct: 555 LPIHPLFKKSKIRYAPDRCEQELQKSKSNSPIQQNVPLQQFITPPFSYPVAYCPAIP 611
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 26.2 bits (55), Expect = 6.0
Identities = 16/63 (25%), Positives = 33/63 (52%)
Frame = +3
Query: 405 EEEDERLKQRPADIDADVRGMERRKRVEALMSSKLFREELERVLDQQMHEGGDAPLLQRI 584
E +D+ LK+ I + +++KR++ + +KL +EE+ ++ + E D LL
Sbjct: 71 ELKDQLLKENEGSISS-----KKKKRLDKYIENKLKKEEVASLIAKLAEERIDTSLLSSS 125
Query: 585 KEM 593
K +
Sbjct: 126 KNL 128
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/58 (27%), Positives = 22/58 (37%)
Frame = -2
Query: 438 PDAASSARLPPRWTGARCRSGSSLSPSQPFRQLESIDLSSKTWVSNPVARVLQESCTV 265
P AS R+PP + + ++P P I S SNP + S TV
Sbjct: 937 PPTASGTRVPPVQQPSHPNPYTPVAPQSPVAAASRISSSPNMPPSNPYTPIAVASSTV 994
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +3
Query: 396 LSTEEEDERLKQRPADIDADVRGMER-----RKRVEALMSSKLFREELERVLD 539
L EE ++ L ++ D+D+ + ++ RK EAL SKL + L V+D
Sbjct: 668 LKLEESNKSLIKKQEDVDSLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVID 720
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,985
Number of Sequences: 5004
Number of extensions: 60882
Number of successful extensions: 206
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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