Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_B24
(863 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.013
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 33 0.069
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.16
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 31 0.28
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.28
SPAC1F7.08 |fio1||iron transport multicopper oxidase Fio1|Schizo... 30 0.37
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 30 0.37
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 30 0.49
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 29 0.85
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 2.0
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 2.6
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 27 3.4
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 27 3.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 3.4
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 4.5
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 26 6.0
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 7.9
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c... 26 7.9
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 26 7.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 35.1 bits (77), Expect = 0.013
Identities = 30/99 (30%), Positives = 37/99 (37%)
Frame = -3
Query: 348 QPDPVPQYSGGAGSKNRPSPSIGGPAPQSEHEKPTGCPTRGRGTSTAPRPLSGRLQPRCG 169
+P P P S +NR P IG + S P P R + P P GR P
Sbjct: 310 RPPPPPPPS----RRNRGKPPIGNGSSNSSLPPPPP-PPRSNAAGSIPLPPQGRSAPPPP 364
Query: 168 CQRVAPSAARETTEPRIY*APRRDPASLSFRPXRATPAV 52
R APS R+ A PA P R+ PA+
Sbjct: 365 PPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPAL 403
Score = 29.5 bits (63), Expect = 0.64
Identities = 36/147 (24%), Positives = 53/147 (36%), Gaps = 9/147 (6%)
Frame = -3
Query: 465 RCAAAGAGTEL*WPGCVAQPTQVHRTGPSIAPPPRRDGAQPDPVPQYSGGAGS------- 307
R +AA P P++ +R P I P P P S AGS
Sbjct: 298 RVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357
Query: 306 KNRPSPSIGGPAPQSEHEKPTGCPTRGRGTSTAPRP-LSGRLQPRCGCQRVAP-SAARET 133
++ P P AP + + P +R AP P + GR P + P A T
Sbjct: 358 RSAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP-----ALPPLGNASRT 412
Query: 132 TEPRIY*APRRDPASLSFRPXRATPAV 52
+ P + P P++ P A P++
Sbjct: 413 STPPVPTPPSLPPSAPPSLPPSAPPSL 439
Score = 27.5 bits (58), Expect = 2.6
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -1
Query: 206 PDPYPDASNHDVGVNGWRPPRPVKPQSLGFIERHVETQPPYP 81
P P P SN V PPRP+ P S+ + ++PP P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMN-PAINSTSKPPLP 293
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 32.7 bits (71), Expect = 0.069
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 7/118 (5%)
Frame = -3
Query: 351 AQPDPVPQ-YSGGAGSKNRPSPSIGGPAPQSEHEKPTGCPTRGRGTSTA-----PRPLSG 190
A P+ + ++ A SK + +P+ PAP+SE KP+ P++ T+ + P LS
Sbjct: 277 ASSKPIKKAWASVAKSKKKVTPA-PAPAPESEPSKPSIAPSQPSKTNVSAAYEKPAELSS 335
Query: 189 RLQP-RCGCQRVAPSAARETTEPRIY*APRRDPASLSFRPXRATPAVACNSFTAAVPE 19
P Q A A ETT AP++ A + + P ++ N +A++P+
Sbjct: 336 SSVPFPHKSQDSATPANVETTPSTATSAPKKSTAPFAINAVKPAPGLS-NISSASLPK 392
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 31.5 bits (68), Expect = 0.16
Identities = 25/67 (37%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Frame = -3
Query: 426 PGCVAQPTQVHRTGPSIAPPPRRDGAQPDPVPQYSGGAGSKNRPSP----SIGG-----P 274
P V PT P P P G P P P GAG P P S GG P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795
Query: 273 APQSEHE 253
APQ+E E
Sbjct: 796 APQAEPE 802
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 30.7 bits (66), Expect = 0.28
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 402 QVHRTGPSIAPPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQSEHEKP 247
+ R S +P PRRD + + P Y G P S+ AP ++KP
Sbjct: 287 EYRRDAYSRSPSPRRD-REENRSPAYEGSKSYSAAPEASMESSAPTESYDKP 337
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.28
Identities = 21/65 (32%), Positives = 28/65 (43%)
Frame = -3
Query: 384 PSIAPPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQSEHEKPTGCPTRGRGTSTAP 205
PS+A PP + PVP+ S A P+PS P P+ P P G P
Sbjct: 1126 PSVAAPPVPVPSGAPPVPKPSVAAPPV--PAPSGAPPVPKPSVAAPP-VPAPSSGIPPVP 1182
Query: 204 RPLSG 190
+P +G
Sbjct: 1183 KPAAG 1187
Score = 29.5 bits (63), Expect = 0.64
Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 5/126 (3%)
Frame = -3
Query: 384 PSIAPPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQSEH---EKPT-GCPTRGRGT 217
PS APP + PVP S G +P+ + P SE KP+ G P +
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPS 1214
Query: 216 STAPRPL-SGRLQPRCGCQRVAPSAARETTEPRIY*APRRDPASLSFRPXRATPAVACNS 40
+ P P S L P AP ++E PR +S+ A+P+ +S
Sbjct: 1215 TAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPR---SSVPSPHSNASPSPTSSS 1271
Query: 39 FTAAVP 22
+A P
Sbjct: 1272 MASAAP 1277
Score = 26.6 bits (56), Expect = 4.5
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 11/110 (10%)
Frame = -3
Query: 384 PSIAPP--PRRDGAQPDPVPQYSG-----GAGSKNRPSPSIGGPAPQSEHEKPTGCPTRG 226
PS+A P P GA P P P + +G+ P PS+ P + P P
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPP-VPKPS 1165
Query: 225 RGTSTAPRPLSG---RLQPRCGCQRV-APSAARETTEPRIY*APRRDPAS 88
P P SG +P G V PS A +P + P P++
Sbjct: 1166 VAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPST 1215
>SPAC1F7.08 |fio1||iron transport multicopper oxidase
Fio1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 622
Score = 30.3 bits (65), Expect = 0.37
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = -3
Query: 384 PSIAPPPR-RDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQSEHEKPTGCPTRGRGTSTA 208
PSI+ P ++ D VP GAG+ S G P+P E P G ++ GT A
Sbjct: 503 PSISSPDFVKEQCMLDGVPTIGNGAGNYKNISDLSGAPSPPG--EMPAGWTSKAIGTMAA 560
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 30.3 bits (65), Expect = 0.37
Identities = 16/47 (34%), Positives = 19/47 (40%)
Frame = -1
Query: 704 PRGVGQSPRPRLEHGPPRMXXPRPQLTFGDTRHAPSMKLAAPPIVGS 564
P P P+ E PP PRP + AP + APPI S
Sbjct: 124 PPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSS 170
Score = 27.9 bits (59), Expect = 2.0
Identities = 24/94 (25%), Positives = 33/94 (35%)
Frame = -3
Query: 339 PVPQYSGGAGSKNRPSPSIGGPAPQSEHEKPTGCPTRGRGTSTAPRPLSGRLQPRCGCQR 160
P ++ G + + P + P PQSE PT P R + P P P
Sbjct: 110 PKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPR----PSIPPPSPASAPPIPSKAP 165
Query: 159 VAPSAARETTEPRIY*APRRDPASLSFRPXRATP 58
PS+ +P AP + P S P P
Sbjct: 166 PIPSSLPPPAQPA---APVKSPPSAPSLPSAVPP 196
Score = 27.9 bits (59), Expect = 2.0
Identities = 37/141 (26%), Positives = 53/141 (37%), Gaps = 2/141 (1%)
Frame = -3
Query: 426 PGCVAQPTQVHRTGPSIAPPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQSEHEKP 247
P A PT P + PPR P P P + SK P PS P ++ P
Sbjct: 125 PSAPAPPTPQSELRPPTSAPPRPSI--PPPSPASAPPIPSKAPPIPS--SLPPPAQPAAP 180
Query: 246 TGCPTRGRGTSTAPRPLSGRLQPRCGCQR-VAPSAARETT-EPRIY*APRRDPASLSFRP 73
P +A P+ ++ P Q VA +++R ++ P AP S F P
Sbjct: 181 VKSPPSAPSLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKF-P 239
Query: 72 XRATPAVACNSFTAAVPECHV 10
R P++ S P +V
Sbjct: 240 NRG-PSIPSASVPPVPPSSYV 259
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -3
Query: 399 VHRTGPSIAPPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQSEHEKPTGCP 235
+ ++ S APP A P PQ + P PSI P+P S P+ P
Sbjct: 115 IGKSSASAAPP----SAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAP 165
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 29.9 bits (64), Expect = 0.49
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 341 SGCAPSLRGGGAIDGPVRCTCVG*ATQPGHYS 436
SGC S GG ++ P RC C+ +P H++
Sbjct: 258 SGCNCSSLGGCDLNNPSRCECLDDLDEPTHFA 289
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 29.1 bits (62), Expect = 0.85
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -3
Query: 300 RPSPSIGGPAPQSEHEKPTGCPTRGRGTSTAPRPLSGRLQPRCGCQRVAP 151
RP PSI +P+S+ K CP + P P S Q R GC + P
Sbjct: 414 RPPPSIAS-SPESKRRK---CPKKFVARPPVPHPTSLYSQIRIGCPYLKP 459
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Frame = -3
Query: 273 APQSEHEKPTGCPT-RGRGTSTAPRPLSGRLQPRCGCQRVAPSAARETTEPRIY*APRRD 97
APQ PT +S PRP+ ++ + ++ A E P+I
Sbjct: 490 APQPSSNVPTKFTGGASESSSVPPRPIPSAMKGKAPASAISIEALEELDPPKITTIDGES 549
Query: 96 PASLSFRPXRATPAVACNSFTAAVPE 19
P+S+S R + +S PE
Sbjct: 550 PSSISSRLPSSNLEQGSSSSVTKSPE 575
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 27.5 bits (58), Expect = 2.6
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
Frame = -3
Query: 333 PQYSGGAGSKNRPSPSIGGPAPQSEHEKPTGCPTRGRGTSTAP--RPLSGRLQPRCGCQR 160
P YS + S + SPS +P P+ PT + T+P P S P
Sbjct: 1590 PSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1649
Query: 159 VAPSAARETTEPRIY*APRRDPASLSFRPXRATPAVACNSFTAAVP 22
+ T+ +P P S S+ P + + S++ P
Sbjct: 1650 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1695
Score = 26.6 bits (56), Expect = 4.5
Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
Frame = -3
Query: 333 PQYSGGAGSKNRPSPSIGGPAPQSEHEKPTGCPTRGRGTSTAP--RPLSGRLQPRCGCQR 160
P YS + S + SPS +P P+ PT + T+P P S P
Sbjct: 1583 PSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS 1642
Query: 159 VAPSAARETTEPRIY*APRRDPASLSFRPXRATPAVACNSFTAAVP 22
+ T+ +P P S S+ P + + S++ P
Sbjct: 1643 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1688
Score = 26.6 bits (56), Expect = 4.5
Identities = 29/112 (25%), Positives = 40/112 (35%), Gaps = 6/112 (5%)
Frame = -3
Query: 390 TGPSIAPP-PRRDGAQPD--PV-PQYSGGAGSKNRPSPSIGGPAPQSEHEKPTGCPTRGR 223
T PS +P P P P P YS + S + SPS +P P+ PT
Sbjct: 1637 TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1696
Query: 222 GTSTAP--RPLSGRLQPRCGCQRVAPSAARETTEPRIY*APRRDPASLSFRP 73
+ T+P P S P + T+ +P P S S+ P
Sbjct: 1697 YSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSP 1748
Score = 25.8 bits (54), Expect = 7.9
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 2/106 (1%)
Frame = -3
Query: 333 PQYSGGAGSKNRPSPSIGGPAPQSEHEKPTGCPTRGRGTSTAP--RPLSGRLQPRCGCQR 160
P Y + S + SPS +P P+ PT ++T+P P S P
Sbjct: 1569 PAYMPSSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSATSPSYSPTSPSYSPTSPSYS 1628
Query: 159 VAPSAARETTEPRIY*APRRDPASLSFRPXRATPAVACNSFTAAVP 22
+ T+ +P P S S+ P + + S++ P
Sbjct: 1629 PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1674
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 27.1 bits (57), Expect = 3.4
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -1
Query: 467 NGALRPAQEPSYSGPVAWLSPHRCTVQGHRSHHPRVETAHNLIRSP 330
NG L ++ PSY+G + H Q S + R T H I +P
Sbjct: 411 NGLLTSSRIPSYNGSKVRSTSHPSRQQYIGSSNSRFNTRHQTISTP 456
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 27.1 bits (57), Expect = 3.4
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = -3
Query: 336 VPQYSGGAGSK-NRPSPSIGGPAPQSEHEKPTGCPTRGRGTSTAPRPLSGRLQPRCGCQR 160
+ ++ AG+ +P P P P S EKPT G S P P ++ P +R
Sbjct: 444 ISSFNSKAGTSFAKPRPFTNNPNPISAPEKPTS----GESLSLNPPPAMPKVFP----ER 495
Query: 159 VAPSAARETTEPRI 118
SA+++ +P +
Sbjct: 496 DISSASQKAAQPSV 509
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 3.4
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = -3
Query: 387 GPSIAPPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQS 262
G I PPP++ + P+P + S P P++ P+P +
Sbjct: 1005 GSQIVPPPKQPANRVVPLPPTASQRASAYEP-PTVSVPSPSA 1045
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 4.5
Identities = 20/70 (28%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Frame = -3
Query: 372 PPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQSEHEKPTG----------CPTRGR 223
PP P P + G+ + P PS S PTG PT
Sbjct: 306 PPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTS 365
Query: 222 GTSTAPRPLS 193
TST P P S
Sbjct: 366 STSTPPPPAS 375
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 305 FEPAPPEYWGTGSGCAPSLRGGGAIDGPV 391
FEP PP+ G GS S RG +G V
Sbjct: 408 FEPQPPKQQGWGSWMWNSFRGASDENGEV 436
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
EF hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 25.8 bits (54), Expect = 7.9
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = -3
Query: 402 QVHRTGPSIAPPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQSEHEKPTGCPTRGR 223
Q RTG + P+R GA P PQ + + +P + GG APQ+ T G
Sbjct: 148 QPQRTGGAGFIQPQRTGAMPAYQPQMN----NFMQPQKT-GGFAPQATGFMQT--QPFGA 200
Query: 222 GTSTAPRPLSGRLQPR 175
S AP+P +G +QP+
Sbjct: 201 APSFAPQP-TGFVQPQ 215
>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 549 EAESLAADYRWRSELHARGVARVPESELRARXXHSRRSVLESWSRRLAN 695
E ES+ S+ AR A + E E R +SVL+SW AN
Sbjct: 151 EVESVTQALFHTSKETARMEAEIFELEQRVALAKEAKSVLDSWVHHEAN 199
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 25.8 bits (54), Expect = 7.9
Identities = 7/15 (46%), Positives = 13/15 (86%)
Frame = +1
Query: 592 FMLGAWRVSPKVSCG 636
F++ AW+++P V+CG
Sbjct: 174 FLMCAWKIAPAVACG 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,606,677
Number of Sequences: 5004
Number of extensions: 81667
Number of successful extensions: 317
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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