Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B24
         (863 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.39 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   8.4  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 17/59 (28%), Positives = 22/59 (37%)
 Frame = -3

Query: 417  VAQPTQVHRTGPSIAPPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQSEHEKPTG 241
            V  PT       S +    R   +   VP   GG+G+ N  SP    PA  +  E   G
Sbjct: 1763 VGHPTNASAHSRSGSQSMPRQNGRYSRVPSQGGGSGTHNVFSPEYDDPANCAPEEDQYG 1821



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 48   KPQREWPSXVGRIRRLGLDVALNKSEALWFH 140
            K Q+EW      ++  G  V L+   A W+H
Sbjct: 1501 KNQQEWNQVSNNVKPGGNFVVLDLVPATWYH 1531


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -3

Query: 291 PSIGGPAPQ-SEHEKPTGCPTRGRGTSTAPRPLSG 190
           PS G P PQ S H+ P   P RG   + +  P  G
Sbjct: 16  PSSGAPGPQPSPHQSPQ-APQRGSPPNPSQGPPPG 49



 Score = 21.8 bits (44), Expect = 8.4
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
 Frame = -3

Query: 405 TQVHRTGPSIAPPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGP--APQSEH 256
           TQ  +   S AP P+    Q    PQ          P P  GGP  AP S++
Sbjct: 10  TQQSQQPSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPP--GGPPGAPPSQN 59


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
 Frame = -3

Query: 426  PGCVAQPTQVHRTGPS------IAPPPRRDGAQPDPVPQYSGGAGSKNRPSPSIGGPAPQ 265
            PG V Q  Q   T PS        PP   +  Q     Q    +   N+P P+ GG   +
Sbjct: 975  PGGVVQSQQPIMTDPSPFKRGRYTPPQPANAQQGQAQAQAKPQSQEANKPKPATGGKGTR 1034

Query: 264  SEHEK 250
             +  K
Sbjct: 1035 PKRGK 1039


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 341 IRSPNIREEPAQRTGRPHQSGDQLRKVSTKSPP 243
           +R P+   EP  R    + SG  L   +T SPP
Sbjct: 27  LRGPSFVMEPPSRVEFSNSSGAWLDCTATGSPP 59


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 341 IRSPNIREEPAQRTGRPHQSGDQLRKVSTKSPP 243
           +R P+   EP  R    + SG  L   +T SPP
Sbjct: 27  LRGPSFVMEPPSRVEFSNSSGAWLDCTATGSPP 59


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +2

Query: 275 GPPIDGDGRFFEPA 316
           GPP DG+G    P+
Sbjct: 355 GPPNDGNGNILSPS 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,308
Number of Sequences: 438
Number of extensions: 6704
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27916710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)