Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B22
         (882 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   2.7  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    27   4.7  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    26   8.2  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   8.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 354 ASALELPPRQDAAPPWSGDRIATRNPQRAPPLPGPREAS 238
           A ++ LPP+  +APP    R A    ++ PPL   R  S
Sbjct: 348 AGSIPLPPQGRSAPPPPPPRSAPSTGRQPPPLSSSRAVS 386


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +3

Query: 531 YLHLVARREPTPKCHHCSGCNEDTAEH 611
           Y HL    + +P+C HC    ED A H
Sbjct: 305 YCHLDYHEQFSPRCKHCKTPIEDQAVH 331


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 697 TTVGSDKSGPIFATRTRRCSAKAGQYAS 614
           TT  + K+GP+F  +    SAK G  AS
Sbjct: 381 TTTSTSKTGPLFGNKPADPSAKPGATAS 408


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 572 PPLQWLQRGHGGA 610
           P L W QRG+GGA
Sbjct: 341 PDLDWTQRGYGGA 353


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 250 GTWKRRRSLRITRGDAISAPGGSRVLARWKFERGSFNLGVPCS--GRGLAAWR 402
           GTW+   ++    G ++  P G  +  RW + R +F+  VP       L AWR
Sbjct: 154 GTWQGITNIVWGIGGSLGGPLGGLIAQRWGW-RTAFHFQVPMGILSTILVAWR 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,761,755
Number of Sequences: 5004
Number of extensions: 49004
Number of successful extensions: 137
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)