Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B22
         (882 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    23   3.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   6.5  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 64  MLTPVSLXRLHELNSTRLNLQRAFW 138
           +L P  +  LH    T LNL   FW
Sbjct: 15  VLFPEKIIGLHNNMCTSLNLSNLFW 39


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 11/49 (22%), Positives = 22/49 (44%)
 Frame = -3

Query: 754  NSQKSSIACQDSSLPSIVATTVGSDKSGPIFATRTRRCSAKAGQYASVC 608
            N+Q +   C D   P+  AT+V ++    +  + + +     G+  S C
Sbjct: 873  NNQPTMNKCSDRKRPASQATSVKAEPGSIMAMSESSKKVLSPGELLSSC 921


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,058
Number of Sequences: 438
Number of extensions: 4730
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)