Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B21
         (862 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                32   0.006
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    24   1.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.6  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    24   2.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    24   2.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   2.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   4.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   6.3  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   8.4  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 32.3 bits (70), Expect = 0.006
 Identities = 14/52 (26%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -3

Query: 746 CSGLRFSVLAK--VXAQRLVARLTSLAPSSVPYSTKCPLQSNATLPSDTHSD 597
           C   R+++ A   + A++L A  +  +P+S+PY+T+  +++ +  P  T  D
Sbjct: 101 CRRQRYNIAAANPLLAEKLAAPSSQASPTSIPYATRAEIKTESIQPETTKVD 152


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 206 CRVSNVCSGVPEACVPSYT*ILFVFLSETA 117
           CR  + CS  P A   SY  + F+++  +A
Sbjct: 113 CRNFSTCSSHPTAAFISYGTLFFIYVQPSA 142


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = -3

Query: 776 WLRRPWKSARCSGLRFSVLAKVXAQRLVAR-LTSLAPSSVPYSTKCPLQS 630
           WLRR   S     L   +L  +    +V   + SL  ++V  STKCP  S
Sbjct: 590 WLRRALASLMVFSLGLFLLLDMFNCVVVEETIPSLNSTNVTLSTKCPYPS 639


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 206 CRVSNVCSGVPEACVPSYT*ILFVFLSETA 117
           CR  + CS  P A   SY  + F+++  +A
Sbjct: 114 CRNFSTCSSHPTAAFISYGTLFFIYVHPSA 143


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 109 SALAVSDRNTNKIHVYDGTQASGTPLHT 192
           SAL   D   N +H+ + T A G  + T
Sbjct: 259 SALVSKDSKFNMVHIQNSTLAGGVAIGT 286


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 674 APSSVPYSTKCPLQSNATLPSDTHSDFSR 588
           AP +V  + KC +  + +LP   HS  SR
Sbjct: 467 APLNVQRAAKCIIGKDYSLPMVNHSKSSR 495


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 22.6 bits (46), Expect = 4.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 108 LSFSCLGQKHK*DSRVRR 161
           ++F CL + +K DSRV R
Sbjct: 369 ITFRCLEENNKIDSRVTR 386


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +1

Query: 292 TGPKHEYNFPKTVRFQSKLDTDLYDFVKNKTCPTALDFSPDGRKMASISLDRKVRVF 462
           T P H +  P     +++LDT +Y  ++ K       + P  R  A + L     VF
Sbjct: 536 TVPIHTWIHPWLPLLRNRLDTLIYPIIRRKLGSALGGWHPSDRS-ARLMLQPWANVF 591


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -2

Query: 639 AAVERHVAQRHALR 598
           A+++RHVA +HA R
Sbjct: 19  ASLKRHVADKHAER 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,379
Number of Sequences: 438
Number of extensions: 4082
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)