Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B19
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    31   0.29 
SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol N-ace...    28   2.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   2.0  
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M...    27   4.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.2  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.2  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   6.2  

>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 211 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 312
           +R H+   GR+  ELDR+ T+L++R   L Q + G
Sbjct: 18  LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52


>SPAC56E4.02c |alg13||N-acetylglucosaminyldiphosphodolichol
           N-acetylglucosaminyltransferase Alg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 162

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 135 YVARSESIVRDSDVAFSHSAALAIAQVRRNGNK 37
           Y    ES + D+ +  SH+ A +I Q  R+G +
Sbjct: 63  YAPEIESYIHDASIVISHAGAGSILQTLRSGKR 95


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/27 (40%), Positives = 11/27 (40%)
 Frame = +2

Query: 794 PSPXTXNPXPXPXPXXXPPPRPXXXPP 874
           P P    P P P P   PPP P    P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGP 761



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
 Frame = +2

Query: 776 PXGVXXPSPXTXNPXPXPXPXXXP---PPRPXXXPPXXS 883
           P  V  P+P    P P P P       PP P   PP  S
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786


>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 342

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 289 FPCVPTQSFVDPIHLKICQYPHGGL 215
           F  +P Q+F    H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 11/33 (33%), Positives = 13/33 (39%)
 Frame = +2

Query: 776  PXGVXXPSPXTXNPXPXPXPXXXPPPRPXXXPP 874
            P  +  P P +  P P   P   PPP P    P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 800 PXTXNPXPXPXPXXXPPPRPXXXPP 874
           P    P P P P   PP +P   PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 389 RARVSNNGSVSWIKRLDISTPISMQLDNWPNDMQTCTFKFGSRMH 523
           RA +++   +  +KR DI    +   DNW ND+  C  + G  +H
Sbjct: 588 RAVIAHMLELDPVKRYDIHRVFA---DNWINDISMCHMENGKVIH 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,184,342
Number of Sequences: 5004
Number of extensions: 63809
Number of successful extensions: 206
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)