Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_B11
(697 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 34 0.017
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 30 0.28
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.1
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 28 1.5
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 3.4
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 3.4
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 3.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.4
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 3.4
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 34.3 bits (75), Expect = 0.017
Identities = 15/40 (37%), Positives = 15/40 (37%)
Frame = +3
Query: 558 PPPPXXXXPPXFFFFXXXPPXXXGGGXXXXXXPPPPPPPP 677
P P PP PP G PPPPPPPP
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 29.1 bits (62), Expect = 0.64
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = +1
Query: 583 PPXFFFFXXXPPXXXGGXXXXXXXPPPPPPPXXXXG 690
PP PP G PPPPPPP G
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
Score = 27.1 bits (57), Expect = 2.6
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = +3
Query: 435 PPPPXXXGXXPPPP 476
PPPP G PPPP
Sbjct: 765 PPPPGVAGAGPPPP 778
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/32 (34%), Positives = 11/32 (34%)
Frame = +3
Query: 381 PPXXXXXXXXGXGPXXGGPPPPXXXGXXPPPP 476
PP P PP P G PPPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/50 (32%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Frame = +3
Query: 312 PPQRGXAPXXPXGNPXFXPP-----GXKPPXXXXXXXXGXGPXXGGPPPP 446
PP P P PP G PP G GP PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/25 (48%), Positives = 12/25 (48%), Gaps = 6/25 (24%)
Frame = +3
Query: 420 PXXGGPPPPXXX------GXXPPPP 476
P GGPPPP G PPPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPP 780
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 30.3 bits (65), Expect = 0.28
Identities = 17/39 (43%), Positives = 17/39 (43%)
Frame = +3
Query: 558 PPPPXXXXPPXFFFFXXXPPXXXGGGXXXXXXPPPPPPP 674
PPPP PP PP G G PPPPPPP
Sbjct: 311 PPPP----PPPSRRNRGKPPI--GNGSSNSSLPPPPPPP 343
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/64 (34%), Positives = 23/64 (35%), Gaps = 3/64 (4%)
Frame = -1
Query: 493 FFXXXXGGGGXXPXXXGGGGPPXXGPXPXXXXXXFXG-GFXPGGKK--XGXPXGXXGAXP 323
F GGG G GGPP GP F G G GG G P G G
Sbjct: 180 FHHRGHNGGGFGGFGGGSGGPP-PGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPG 238
Query: 322 LWGG 311
+GG
Sbjct: 239 GFGG 242
Score = 25.4 bits (53), Expect = 7.8
Identities = 23/87 (26%), Positives = 24/87 (27%)
Frame = -1
Query: 676 GGGGGGGGXXXXXXPPPXXXXXXXXXXXXXXGXXXXGGGGXPPPXKKXXXXGXXXXXXXX 497
GG GG GG P P GG G P + G
Sbjct: 188 GGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGG- 246
Query: 496 FFFXXXXGGGGXXPXXXGGGGPPXXGP 416
F GG G P GGG GP
Sbjct: 247 --FGGGLGGFGGGPGGFGGGPGGHGGP 271
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/55 (29%), Positives = 16/55 (29%), Gaps = 4/55 (7%)
Frame = +3
Query: 324 GXAPXXPXGNPXFXPPGXKPPXXXXXXXX----GXGPXXGGPPPPXXXGXXPPPP 476
G AP P P P PP P PP P PPPP
Sbjct: 1680 GMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 654 PPPPPPPP 677
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 654 PPPPPPPP 677
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 654 PPPPPPPP 677
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 654 PPPPPPPP 677
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 654 PPPPPPPP 677
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = +3
Query: 612 PPXXXGGGXXXXXXPPPPPPP 674
PP G PPPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPP 30
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 654 PPPPPPPP 677
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 654 PPPPPPPP 677
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 654 PPPPPPPP 677
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 3.4
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = +3
Query: 654 PPPPPPPP 677
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,025,015
Number of Sequences: 5004
Number of extensions: 35770
Number of successful extensions: 310
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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