Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B11
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.23 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.30 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   6.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   6.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.5  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 654  PPPPPPPP 677
            PPPPPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 659  PPPPPPXXXXG 691
            PPPPPP    G
Sbjct: 1355 PPPPPPPPSSG 1365


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 315 PQRGXAPXXPXGNPXFXPPGXKP 383
           PQRG  P    G P   PPG  P
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAPP 56


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 654 PPPPPPPP 677
           P PPPPPP
Sbjct: 341 PAPPPPPP 348



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +1

Query: 655 PPPPPPPXXXXG 690
           P PPPPP    G
Sbjct: 341 PAPPPPPPSSSG 352


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 654  PPPPPPPP 677
            P PPPPPP
Sbjct: 1857 PEPPPPPP 1864


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 59  VISDCCTYWLKWTSV 103
           V S   T+WL+W +V
Sbjct: 315 VTSSFITFWLEWNAV 329


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 59  VISDCCTYWLKWTSV 103
           V S   T+WL+W +V
Sbjct: 284 VTSSFITFWLEWNAV 298


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 59  VISDCCTYWLKWTSV 103
           V S   T+WL+W +V
Sbjct: 335 VTSSFITFWLEWNAV 349


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 59  VISDCCTYWLKWTSV 103
           V S   T+WL+W +V
Sbjct: 284 VTSSFITFWLEWNAV 298


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 22  LAWCTYYILVTL 57
           LAW  +Y+LV+L
Sbjct: 119 LAWALFYLLVSL 130


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +1

Query: 22  LAWCTYYILVTL 57
           LAW  +Y+LV+L
Sbjct: 172 LAWALFYLLVSL 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,595
Number of Sequences: 438
Number of extensions: 8852
Number of successful extensions: 43
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)