Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B10
         (872 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.16 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.16 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.37 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.6  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 12/17 (70%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
 Frame = +3

Query: 714 PPPPPXXXPP--PPPPP 758
           PPPPP   PP  PPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPP 28



 Score = 29.5 bits (63), Expect = 0.65
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
 Frame = +3

Query: 714 PPPPPXXXPPP--PPPPXXXG 770
           PPPPP    PP  PPPP   G
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +3

Query: 723 PPXXXPPPPPPP 758
           PP   PPPPPPP
Sbjct: 5   PPGNPPPPPPPP 16



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/21 (57%), Positives = 12/21 (57%), Gaps = 6/21 (28%)
 Frame = +3

Query: 714 PPPPPX------XXPPPPPPP 758
           PPPPP         PPPPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPP 30


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +3

Query: 711 VPPPPPXXXPPPPPPP 758
           VPPP P    PPPPPP
Sbjct: 751 VPPPAPIMGGPPPPPP 766



 Score = 30.7 bits (66), Expect = 0.28
 Identities = 12/18 (66%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
 Frame = +3

Query: 714 PPPPPX---XXPPPPPPP 758
           PPPPP      PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
 Frame = +3

Query: 711 VPPPPPXXX----PPPPPPPXXXG 770
           +P PPP       PPPPPPP   G
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAG 772



 Score = 26.2 bits (55), Expect = 6.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 711 VPPPPPXXXPPPPPPPXXXG 770
           VP P P   P PPP P   G
Sbjct: 741 VPTPAPAPIPVPPPAPIMGG 760


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +3

Query: 714  PPPPPXXXPPPPPPP 758
            PPPPP   PPPP  P
Sbjct: 1707 PPPPPMSVPPPPSAP 1721



 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 714  PPPPPXXXPPPPPPPXXXG 770
            PPPP    PPP  PP   G
Sbjct: 1708 PPPPMSVPPPPSAPPMPAG 1726


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect(2) = 1.5
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 717 PPPPXXXPPPPPPP 758
           PPPP     PP PP
Sbjct: 273 PPPPATPSQPPRPP 286



 Score = 22.6 bits (46), Expect(2) = 1.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 714 PPPPPXXXPP 743
           PPPPP   PP
Sbjct: 239 PPPPPPTLPP 248


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 711 VPPPPPXXXPPPPPPP 758
           +P PP     PPPPPP
Sbjct: 351 IPLPPQGRSAPPPPPP 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,196,416
Number of Sequences: 5004
Number of extensions: 35773
Number of successful extensions: 250
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)