Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B10
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.69 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.91 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   8.5  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.69
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 723 PPXXXPPPPPP 755
           PP   PPPPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +3

Query: 717 PPPPXXXPPPPPPPXXXG 770
           PP P    PPPPPP   G
Sbjct: 338 PPKPA---PPPPPPSSSG 352


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 0.91
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 738  PPPPPPPXXXG 770
            PPPPPPP   G
Sbjct: 1355 PPPPPPPPSSG 1365


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 717 PPPPXXXPPPPPPP 758
           PP P   PPP  PP
Sbjct: 39  PPNPSQGPPPGGPP 52


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 319 GFPPRGSQKXXGKPXQ 366
           GFPPR  +    KP Q
Sbjct: 427 GFPPRSKKNKLKKPRQ 442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,739
Number of Sequences: 438
Number of extensions: 5824
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)