Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_B09
(894 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 35 0.014
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 35 0.014
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 28 2.1
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 27 4.8
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 4.8
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 4.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 4.8
SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces pombe... 26 8.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 8.3
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 35.1 bits (77), Expect = 0.014
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 653 PPPPPPPPXXXXXXXPPPP 597
PPPPPPPP PPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPP 27
Score = 31.9 bits (69), Expect = 0.13
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 652 PPPPPPPXXXXXXXXPPPP 596
PPPPPPP PPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 892 PPPPXXXXXXXXXPPPPPPP 833
PPPP PPPPPPP
Sbjct: 11 PPPPPPGFEPPSQPPPPPPP 30
Score = 28.7 bits (61), Expect = 1.2
Identities = 10/22 (45%), Positives = 11/22 (50%)
Frame = -3
Query: 652 PPPPPPPXXXXXXXXPPPPXXF 587
PPPPPP PPPP +
Sbjct: 11 PPPPPPGFEPPSQPPPPPPPGY 32
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 892 PPPPXXXXXXXXXPPPPPPP 833
PPPP PPPPPP
Sbjct: 10 PPPPPPPGFEPPSQPPPPPP 29
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 894 PPPPXXXXXXXXXXXPPPPPP 832
PPPP PPPPPP
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPP 29
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.1 bits (77), Expect = 0.014
Identities = 12/19 (63%), Positives = 12/19 (63%)
Frame = -2
Query: 653 PPPPPPPPXXXXXXXPPPP 597
PPPPPPPP PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779
Score = 31.9 bits (69), Expect = 0.13
Identities = 11/19 (57%), Positives = 11/19 (57%)
Frame = -3
Query: 652 PPPPPPPXXXXXXXXPPPP 596
PPPPPPP PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 892 PPPPXXXXXXXXXPPPPPPP 833
PPPP PPPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPP 781
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 892 PPPPXXXXXXXXXPPPPPPP 833
PPPP PPPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782
Score = 31.5 bits (68), Expect = 0.17
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -3
Query: 892 PPPPXXXXXXXXXPPPPPPP 833
PPPP PPPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783
Score = 28.3 bits (60), Expect = 1.6
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 652 PPPPPPPXXXXXXXXPPPP 596
PPPPPP PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/21 (47%), Positives = 10/21 (47%)
Frame = -1
Query: 894 PPPPXXXXXXXXXXXPPPPPP 832
PPPP PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 653 PPPPPPPP 630
PPPPPPPP
Sbjct: 775 PPPPPPPP 782
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 653 PPPPPPPP 630
PPPPPPPP
Sbjct: 776 PPPPPPPP 783
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.9 bits (59), Expect = 2.1
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 652 PPPPPPPXXXXXXXXPPPP 596
PPPPPPP P PP
Sbjct: 337 PPPPPPPRSNAAGSIPLPP 355
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 650 PPPPPPPXXXXXXXPP 603
PPPPPPP PP
Sbjct: 311 PPPPPPPSRRNRGKPP 326
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -3
Query: 649 PPPPPPXXXXXXXXPPPP 596
PPPPPP PPP
Sbjct: 361 PPPPPPRSAPSTGRQPPP 378
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 653 PPPPPPPP 630
PPPPPPPP
Sbjct: 306 PPPPPPPP 313
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 653 PPPPPPPP 630
PPPPPPPP
Sbjct: 307 PPPPPPPP 314
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 653 PPPPPPPP 630
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 653 PPPPPPPP 630
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 653 PPPPPPPP 630
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 653 PPPPPPPP 630
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 653 PPPPPPPP 630
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 4.8
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -2
Query: 653 PPPPPPPP 630
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPAC644.11c |||pyruvate dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 8.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = -2
Query: 185 GLXLNFFSPVNISGATGAKNXTFGVXXPGGG 93
G+ +FF P+ + A G ++ T + GGG
Sbjct: 310 GVDSDFFPPIKVIVAKGQEDITIKISDEGGG 340
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -2
Query: 653 PPPPPPPPXXXXXXXPPP 600
PPPPPP P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Score = 25.8 bits (54), Expect = 8.3
Identities = 9/18 (50%), Positives = 9/18 (50%)
Frame = -1
Query: 651 PPPPPPPXXXXXXXPPPP 598
PPPPPP P PP
Sbjct: 5 PPPPPPAPAPAAAAPAPP 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,202,933
Number of Sequences: 5004
Number of extensions: 39235
Number of successful extensions: 573
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -