Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B08
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    29   1.2  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   8.2  

>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -3

Query: 726 WHXLVKTLYXKGSIXRAFAVPMRTEH--LGSSQLLPFCSTR 610
           +H + + L   GSI   FAVP++ EH    S  L+P   T+
Sbjct: 398 FHGIAELLEILGSIINGFAVPLKEEHKIFLSKVLIPLHQTK 438


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 19/74 (25%), Positives = 34/74 (45%)
 Frame = -1

Query: 284 SQAQTGSSFPADSPKPVPLAVVSLDRDIPTTSHGPTNLAVIRTEA*TSRXPRYRSVLQTN 105
           SQ +  SS    +P      ++S    +   +H  +N A   + + T R  R  +  ++N
Sbjct: 198 SQQKAPSSSSTATPASAASEIISNKDPVVEPTHSASNAA--NSGSNTIRA-RQTTRTRSN 254

Query: 104 TVPFTPLAFSPFWG 63
           T+P++P  F P  G
Sbjct: 255 TLPWSPRVFGPTLG 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,428,357
Number of Sequences: 5004
Number of extensions: 69313
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)