Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B04
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    30   0.48 
SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...    26   6.0  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    26   6.0  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    26   7.9  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    26   7.9  

>SPAC2F7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 491

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +2

Query: 494 LGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSL-----RNKVTLYKTCIRPG 658
           LG++    M +  H   + D+   +LGR+ P+LCSR  + +       K TL KT  + G
Sbjct: 177 LGISSKYAMLYTSHSFNLVDK---LLGRINPLLCSRGHVYVVGEANSGKSTLLKTLAKRG 233

Query: 659 HDV 667
           + V
Sbjct: 234 NGV 236


>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
 Frame = -2

Query: 219 SARWVTGDRGISLIYKLNNXRGERGALRDSGGQLTGTRTSSL-------YSISKRTVRQE 61
           SA  + G +GI   Y     R     L   GGQ  G R+ +L       +  + R  ++E
Sbjct: 297 SAHKIYGPKGIGAAYVRRRPRVRLEPLISGGGQERGLRSGTLAPSQVVGFGTAARICKEE 356

Query: 60  VSYD 49
           + YD
Sbjct: 357 MKYD 360


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
            Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 298  HPGTVVPEVANRHQPHEKRS 357
            HP  VV +VAN + PH K S
Sbjct: 1284 HPERVVLKVANSYYPHSKAS 1303


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 368 KRGRP-PNITSSIPLRSRRANTSAVSP 445
           KR RP PNI +S P  +R  +T  V+P
Sbjct: 128 KRDRPLPNIRNSAPSATRSHSTPCVAP 154


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 131 ESRKAPRSPRLLFSLYINDIPRSPVTHLALFADDTA 238
           E  K+P +P+L F+LY        +T+ A    D A
Sbjct: 532 ELAKSPNTPKLFFNLYSGYYALMTLTYCATLTKDDA 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,449,883
Number of Sequences: 5004
Number of extensions: 73722
Number of successful extensions: 209
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)