Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_B04
(859 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 48 1e-05
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 38 0.009
Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical pr... 31 1.1
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 30 1.8
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 30 2.4
Z70310-10|CAA94371.2| 341|Caenorhabditis elegans Hypothetical p... 29 5.6
Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical pr... 29 5.6
U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta p... 29 5.6
AL023841-13|CAA19513.2| 341|Caenorhabditis elegans Hypothetical... 29 5.6
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr... 28 7.4
AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear recep... 28 9.8
AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormo... 28 9.8
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 47.6 bits (108), Expect = 1e-05
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = +1
Query: 10 KLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXI 165
KL ++ L++ + +FLSNRSFR R+ T S + T GVPQG+ LSP +
Sbjct: 36 KLVSLRKNKNLLIWVNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLL 87
Score = 39.9 bits (89), Expect = 0.002
Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 2/167 (1%)
Frame = +2
Query: 161 LLFSLYINDIPRSPVTHLAL--FADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRID 334
LLF +Y+NDI +A FADDT +Y S K LQ A+ + W + ++
Sbjct: 86 LLFGIYVNDISSILPEKVACKQFADDTKLYASTPKTE-SENNLQSALDAVVDWTKGSKLT 144
Query: 335 INPTKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDR 514
+N +K T + + RR + L G PI + + LG +
Sbjct: 145 LNQSK--------------TVHVTVGKRRIDFK----YHLDGYPIERKAITRDLGFLISE 186
Query: 515 GMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKTCIRP 655
+ F H + + A F L ++ + +K + + LYKT IRP
Sbjct: 187 KLDFSDHWRKCINLAKFQLANMFNKYSTSNK---KLMILLYKTFIRP 230
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 37.9 bits (84), Expect = 0.009
Identities = 29/125 (23%), Positives = 55/125 (44%)
Frame = +2
Query: 164 LFSLYINDIPRSPVTHLALFADDTAIYYSCRKMSLLHRRLQIAVATLGQWFRKWRIDINP 343
LF+ Y+ D+P T L +ADD +I +K+ ++Q+ + + ++ ++ + I+
Sbjct: 543 LFTFYLKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISA 602
Query: 344 TKSAAVLFKRGRPPNITSSIPLRSRRANTSAVSPITLFGQPIPWVSKVKYLGVTLDRGMT 523
KS +F S P + I PIP ++ K LG+TL+
Sbjct: 603 EKSTVTVF---------SCDPKEHK-----TKPDIYWMDDPIPVINAPKLLGITLNTMTG 648
Query: 524 FRPHI 538
+ H+
Sbjct: 649 TKDHV 653
Score = 31.5 bits (68), Expect = 0.79
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 25 GVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQLTAGVPQGSALSPXII*F 174
G+ ++ L + ++L R R + S+ L GVPQGS +SP + F
Sbjct: 497 GIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTF 546
>Z47067-3|CAA87330.2| 446|Caenorhabditis elegans Hypothetical
protein C43C3.3 protein.
Length = 446
Score = 31.1 bits (67), Expect = 1.1
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Frame = +2
Query: 17 TTWECQTDSCSSYE-TSCRTVRFDIE*RELVLVPVN*P-----PESRKAPRSPRLLFSLY 178
TT TD S + T+ TV IE ELV P++ P P ++ P+ +
Sbjct: 317 TTRSAPTDDNGSLDLTNSLTVVSRIESAELVASPISQPTIVDTPSEQRRDPCPKSSNMGF 376
Query: 179 INDIPRSPVTHLALFADDTAIYYSCRKMSL 268
I I + L LF+ AIY+ C+ S+
Sbjct: 377 IPLIIMGSLASLLLFSAGAAIYFGCKLKSM 406
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 10 KLYNMGVPDRLVLIIRDFLSNRSFRYRVEG-TRSRPRQLTAGVPQGSALSPXI 165
KL++ G+ DFLS+R+F +V +++GVP+GS P +
Sbjct: 15 KLHDFGINPLFCNWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFL 67
Score = 29.9 bits (64), Expect = 2.4
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = +2
Query: 464 PIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRNKVTLYKT 643
PI + + LG+ D +TF+PHIK + + L R +L S L L+KT
Sbjct: 188 PISPSNIARDLGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKT 244
Query: 644 CIRP 655
I P
Sbjct: 245 YILP 248
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +1
Query: 10 KLYNMGVPDRLVLIIRDFLSNRSFRYRVEGTRSRPRQ-LTAGVPQGSALSPXI 165
KL G+ ++FL NR+F ++ S+ +++GVPQGS P +
Sbjct: 839 KLAKFGLDSLTCSWYKEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLL 891
>Z70310-10|CAA94371.2| 341|Caenorhabditis elegans Hypothetical
protein Y43C5B.3 protein.
Length = 341
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 578 LYPMLCSRSKLSLRNKVTLYKTCIRPGHDVRKR 676
LYP+ RS+L L+ + T+Y++ D+ KR
Sbjct: 58 LYPLAVLRSQLQLQKQNTVYRSTFHAYSDISKR 90
>Z35604-2|CAA84677.1| 809|Caenorhabditis elegans Hypothetical
protein ZK1058.2 protein.
Length = 809
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 719 PEGFQVGAGCVSEHYACVRHDRGVCKFCRELPYCGGTVC 603
PE G C +++ C RHDR +C E CG +C
Sbjct: 554 PEEQISGEFCECDNFNCPRHDRKICAEHGEC-NCGKCIC 591
>U19744-1|AAA85704.1| 809|Caenorhabditis elegans integrin beta
pat-3 protein.
Length = 809
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 719 PEGFQVGAGCVSEHYACVRHDRGVCKFCRELPYCGGTVC 603
PE G C +++ C RHDR +C E CG +C
Sbjct: 554 PEEQISGEFCECDNFNCPRHDRKICAEHGEC-NCGKCIC 591
>AL023841-13|CAA19513.2| 341|Caenorhabditis elegans Hypothetical
protein Y43C5B.3 protein.
Length = 341
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 578 LYPMLCSRSKLSLRNKVTLYKTCIRPGHDVRKR 676
LYP+ RS+L L+ + T+Y++ D+ KR
Sbjct: 58 LYPLAVLRSQLQLQKQNTVYRSTFHAYSDISKR 90
>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
protein B0198.3 protein.
Length = 1050
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/65 (21%), Positives = 30/65 (46%)
Frame = +2
Query: 566 ILGRLYPMLCSRSKLSLRNKVTLYKTCIRPGHDVRKRSVRSRSPHPLEILQVIQSRFCRI 745
+ GRL P + +L++K+ +TC+R G + S H +++ + C++
Sbjct: 43 VSGRLLPHIRIIYMRTLKSKLFKKRTCVRFGEIKERISNTDTLYHEVDVFNKTEFSLCKL 102
Query: 746 AVGTP 760
+P
Sbjct: 103 GCNSP 107
>AY204174-1|AAO39178.1| 344|Caenorhabditis elegans nuclear receptor
NHR-64 protein.
Length = 344
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 2 TGINYTTWECQTDSCSSYETSCRTVRFDI 88
TG +Y C D C + SCR RFD+
Sbjct: 35 TGKHYGAMSC--DGCKAKRNSCRKCRFDV 61
>AF043694-2|AAT27251.1| 387|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 64, isoform b protein.
Length = 387
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 2 TGINYTTWECQTDSCSSYETSCRTVRFDI 88
TG +Y C D C + SCR RFD+
Sbjct: 78 TGKHYGAMSC--DGCKAKRNSCRKCRFDV 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,517,380
Number of Sequences: 27780
Number of extensions: 450842
Number of successful extensions: 1107
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1107
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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