Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP07_FL5_B02
         (1018 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0118 + 14597863-14597929,14598844-14599806,14599909-145999...    31   1.5  
07_03_1136 + 24218601-24218734,24218769-24219906                       30   3.4  

>03_03_0118 +
           14597863-14597929,14598844-14599806,14599909-14599936,
           14600288-14600666
          Length = 478

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +2

Query: 284 PPLXFFKXGAFFSXXXKNFSPPPXXFXPPQXGGXGXPPPXGG 409
           PP  F    A  +     F+PP   F  P  GG G PP   G
Sbjct: 386 PPTDFSPPAAGTTPPAGGFTPPAGGFGTPPLGGFGTPPSGFG 427


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -2

Query: 408 PPXGGGXPXPPXWGGXNXXGGG 343
           PP GGG P P   GG    GGG
Sbjct: 91  PPGGGGAPGPLGGGGARPPGGG 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,780,771
Number of Sequences: 37544
Number of extensions: 307472
Number of successful extensions: 493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 482
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2998973440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)