Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_B02
(1018 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 32 0.75
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 32 0.75
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 31 0.99
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.3
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.3
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.3
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 9.3
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.9 bits (69), Expect = 0.75
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 344 PPPXXFXPPQXGGXGXPPPXG 406
PPP F PP GG PPP G
Sbjct: 320 PPPSRFGPPGMGGMPPPPPPG 340
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.75
Identities = 12/21 (57%), Positives = 12/21 (57%)
Frame = +2
Query: 344 PPPXXFXPPQXGGXGXPPPXG 406
PPP F PP GG PPP G
Sbjct: 330 PPPSRFGPPGMGGMPPPPPPG 350
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 31.5 bits (68), Expect = 0.99
Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Frame = +2
Query: 338 FSPPPXXFXPPQ-XGGXG--XPPPXGGXXXXXXXXXXXXXXXXXXXGXGPPXKGG 493
F+PPP F PQ GG G PPP GG G GPP GG
Sbjct: 390 FAPPPSAFGAPQGPGGPGGYGPPPPGG----PGAPGSYGPPQGGPGGFGPPPPGG 440
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/75 (29%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Frame = -2
Query: 564 PPPPXXXXXXXXXXXGGXXXXKXXPPFXGGPXPXXXXXXXXXXXXXXXXXXK-PPXGGGX 388
PPP GG PP GGP P PP GG
Sbjct: 686 PPPTKMNLSAPSTSAGGS---SALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP 742
Query: 387 PXPPXWGGXNXXGGG 343
P PP GG GG
Sbjct: 743 PPPPPPGGLPPISGG 757
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 344 PPPXXFXPPQXGGXGXPPPXGG 409
PPP PP GG PPP GG
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGG 734
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 344 PPPXXFXPPQXGGXGXPPPXGG 409
PPP PP GG PPP GG
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGG 750
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/75 (29%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Frame = -2
Query: 564 PPPPXXXXXXXXXXXGGXXXXKXXPPFXGGPXPXXXXXXXXXXXXXXXXXXK-PPXGGGX 388
PPP GG PP GGP P PP GG
Sbjct: 686 PPPTKMNLSAPSTSAGGS---SALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP 742
Query: 387 PXPPXWGGXNXXGGG 343
P PP GG GG
Sbjct: 743 PPPPPPGGLPPISGG 757
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 344 PPPXXFXPPQXGGXGXPPPXGG 409
PPP PP GG PPP GG
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGG 734
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 344 PPPXXFXPPQXGGXGXPPPXGG 409
PPP PP GG PPP GG
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGG 750
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 31.1 bits (67), Expect = 1.3
Identities = 22/75 (29%), Positives = 22/75 (29%), Gaps = 1/75 (1%)
Frame = -2
Query: 564 PPPPXXXXXXXXXXXGGXXXXKXXPPFXGGPXPXXXXXXXXXXXXXXXXXXK-PPXGGGX 388
PPP GG PP GGP P PP GG
Sbjct: 269 PPPTKMNLSAPSTSAGGS---SALPPITGGPPPPPGLPPITGGPPPPPPPGGLPPITGGP 325
Query: 387 PXPPXWGGXNXXGGG 343
P PP GG GG
Sbjct: 326 PPPPPPGGLPPISGG 340
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 344 PPPXXFXPPQXGGXGXPPPXGG 409
PPP PP GG PPP GG
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGG 317
Score = 30.3 bits (65), Expect = 2.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 344 PPPXXFXPPQXGGXGXPPPXGG 409
PPP PP GG PPP GG
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGG 333
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 28.3 bits (60), Expect = 9.3
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +2
Query: 341 SPPPXXFXPPQXGGXGXPPPXGG 409
+PPP PP GG PPP G
Sbjct: 575 APPPPPPPPPMLGGPPPPPPPPG 597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,670,860
Number of Sequences: 27780
Number of extensions: 188647
Number of successful extensions: 466
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2678332928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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