Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP07_FL5_A02
(937 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 51 2e-08
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 49 7e-08
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 47 2e-07
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 47 2e-07
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 47 3e-07
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 47 3e-07
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 45 9e-07
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 45 9e-07
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 45 1e-06
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 44 2e-06
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 43 5e-06
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 42 1e-05
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 42 1e-05
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 41 1e-05
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 41 2e-05
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 40 3e-05
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 35 0.001
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 35 0.001
DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated... 26 0.56
DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 25 1.3
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 24 2.3
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 23 3.0
DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chlor... 23 3.0
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 23 5.3
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 50.8 bits (116), Expect = 2e-08
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 6/105 (5%)
Frame = +2
Query: 95 IASAAECENATSLSLMIDSLLATYDRDSPPDSK----IVVNLTLHLRHA-NIRESESTVR 259
I SA C + D LL+ Y+R P S +VV L L L ++ + +
Sbjct: 9 ILSARICHGNPDAKRLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILT 68
Query: 260 IQAXLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
L+ W D + W+ E+G T L V SE +W PD+VL N A
Sbjct: 69 TNVWLEHEWQDHKFQWDPAEYGGVTELYVPSEHIWLPDIVLYNNA 113
Score = 23.8 bits (49), Expect = 2.3
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 408 TTLSAPVYLITGSVSXIKRLDXSTPISMXLDNWXNDMQTCTFKFGS 545
TT++ + TG V + + + + D QTC KFGS
Sbjct: 120 TTMTKAILHYTGKVLWTPPAIFKSSCEIDVRYFPFDQQTCFMKFGS 165
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 48.8 bits (111), Expect = 7e-08
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQAXLQ 277
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVL 379
+ W L+W + E+ ++ V S +W PD+V+
Sbjct: 88 LMWEQSHLTWKSSEFDSINSIRVKSYEIWVPDIVM 122
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.2 bits (107), Expect = 2e-07
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 230 NIRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 404 GDYALRARVSNNG 442
G Y V++NG
Sbjct: 153 GTYQTNVVVTHNG 165
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 47.2 bits (107), Expect = 2e-07
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 230 NIRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 152
Query: 404 GDYALRARVSNNG 442
G Y V++NG
Sbjct: 153 GTYQTNVVVTHNG 165
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 46.8 bits (106), Expect = 3e-07
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 230 NIRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNG 442
G Y V++NG
Sbjct: 85 GTYQTSVVVTHNG 97
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 46.8 bits (106), Expect = 3e-07
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Frame = +2
Query: 83 LTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NIRESE 247
++C +A + + D LL+ Y+R P ++ V + L L ++
Sbjct: 5 ISCLVAPFPGASANSEAKRLYDDLLSNYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKN 64
Query: 248 STVRIQAXLQMNWIDKRLSWNAGEWG-CSTWLVSSERLWRPDVVLLNAA 391
+ ++ W D +L WN ++G T V SE +W PD+VL N A
Sbjct: 65 QIMTTNVWVEQEWNDYKLKWNPDDYGGVDTLHVPSEHIWLPDIVLYNNA 113
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 45.2 bits (102), Expect = 9e-07
Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQAXLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 385
+D+RL++ G+ + + R+W+PD N
Sbjct: 62 VDRRLAFQGGKETLALSISMLARIWKPDTYFYN 94
Score = 26.2 bits (55), Expect = 0.43
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 441 GSVSXIKRLDXSTPISMXLDNWXNDMQTCTFKFGS 545
G V RL M L+N+ D Q C +FGS
Sbjct: 116 GRVLYSSRLTIKAGCPMNLENFPMDTQRCPLQFGS 150
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 45.2 bits (102), Expect = 9e-07
Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 7/131 (5%)
Frame = +2
Query: 71 YQFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPP----DSKIVVNLTLHLRHA-NI 235
+ + A+A++ + +++ LL TY+ P +V++ L L ++
Sbjct: 4 WTLMAAIALAASGLVNGGSHEKRLLNDLLDTYNVLERPVGNESEPLVLSFGLTLMQIIDV 63
Query: 236 RESESTVRIQAXLQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA-ATTAGD 409
E + L++ W D + WN ++G L + RLW+PDV++ N+A G
Sbjct: 64 DEKNQLLITNLWLKLEWNDVNMRWNVSDYGGVRDLRIPPHRLWKPDVLMYNSADEGFDGT 123
Query: 410 YALRARVSNNG 442
Y V NNG
Sbjct: 124 YPTNVVVKNNG 134
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 230 NIRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNG 442
G Y V+++G
Sbjct: 85 GTYQTSVVVTHDG 97
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 230 NIRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNG 442
G Y V+++G
Sbjct: 85 GTYQTSVVVTHDG 97
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 230 NIRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNG 442
G Y V+++G
Sbjct: 85 GTYQTSVVVTHDG 97
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 230 NIRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNG 442
G Y V+++G
Sbjct: 85 GTYQTSVVVTHDG 97
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 44.8 bits (101), Expect = 1e-06
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Frame = +2
Query: 230 NIRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAA-ATTA 403
++ E + A L++ W+D L WN E+ G ++ +LW+PD+++ N+A
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWNESEYGGVKDLRITPNKLWKPDILMYNSADEGFD 84
Query: 404 GDYALRARVSNNG 442
G Y V+++G
Sbjct: 85 GTYQTSVVVTHDG 97
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 44.0 bits (99), Expect = 2e-06
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Frame = +2
Query: 113 CENATSLSLMIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAX 271
C + D LL+ Y++ P + LT+ ++ N++ T +
Sbjct: 19 CSGNPDAKRLYDDLLSNYNKLVRPVVNVTDALTVKIKLKLSQLIDVNLKNQIMTTNL--W 76
Query: 272 LQMNWIDKRLSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
++ +W D +L W+ E+G L V S+ +WRPD+VL N A
Sbjct: 77 VEQSWYDYKLKWDPKEYGGVEMLHVPSDHIWRPDIVLYNNA 117
Score = 21.8 bits (44), Expect = 9.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 513 DMQTCTFKFGS 545
D QTC KFGS
Sbjct: 159 DEQTCVMKFGS 169
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 42.7 bits (96), Expect = 5e-06
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
Frame = +2
Query: 140 MIDSLLATYDRDSPPDSKIVVNLTLHLR-------HANIRESESTVRIQAXLQMNWIDKR 298
+ D LL+ Y+R P LT+ L N++ T + ++ W D +
Sbjct: 37 LYDDLLSNYNRLIRPVMNNTETLTVQLGLKLSQLIEMNLKNQVMTTNV--WVEQRWNDYK 94
Query: 299 LSWNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
L WN E+G L V SE +W PD+VL N A
Sbjct: 95 LKWNPEEYGGVEMLYVPSENIWLPDIVLYNNA 126
Score = 23.4 bits (48), Expect = 3.0
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 408 TTLSAPVYLITGSVSXIKRLDXSTPISMXLDNWXNDMQTCTFKFGSRMHN 557
T ++ TG VS + + ++ + D Q+C KFGS +N
Sbjct: 133 TLMTKATLKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSWTYN 182
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 41.5 bits (93), Expect = 1e-05
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWR 364
K+ VN L ++ N+ E ++ L+ W D +L W+ ++ G + +++W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWDEADYGGIGVLRLPPDKVWK 110
Query: 365 PDVVLLNAAATTAGDYALR 421
PD+VL N A G+Y +R
Sbjct: 111 PDIVLFNNA---DGNYEVR 126
Score = 25.4 bits (53), Expect = 0.75
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 513 DMQTCTFKFGSRMHNTDEM 569
D QTC KFGS N D++
Sbjct: 161 DQQTCIMKFGSWTFNGDQV 179
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 41.5 bits (93), Expect = 1e-05
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +2
Query: 194 IVVNLTLHLRHANIRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPD 370
+V L+LH ++ E + + W D L WNA E+ G V R+WRPD
Sbjct: 33 VVFGLSLH-HIIDVDEKNQILTTNCWVTQIWTDHHLKWNASEFAGIRVIRVPYNRVWRPD 91
Query: 371 VVLLNAA 391
+L N A
Sbjct: 92 TILYNNA 98
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 41.1 bits (92), Expect = 1e-05
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAX---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLL-NAAATTAGDYALRARVSNNGL 445
W E+G L V S+ +WRPD+VL NA A +A + + GL
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNADGNFEVTLATKATIYHQGL 140
Score = 21.8 bits (44), Expect = 9.2
Identities = 8/11 (72%), Positives = 8/11 (72%)
Frame = +3
Query: 513 DMQTCTFKFGS 545
D QTC KFGS
Sbjct: 163 DEQTCVLKFGS 173
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 40.7 bits (91), Expect = 2e-05
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP--DSKIVVNLTLHLRHANIRESESTVRIQAX---LQMNWIDKRLS 304
+ D LL+ Y++ P ++ V+ + + L+ + + + +I ++ +W D +L
Sbjct: 32 LYDDLLSNYNKLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLR 91
Query: 305 WNAGEWGCSTWL-VSSERLWRPDVVLLNAA 391
W E+G L V S+ +WRPD+VL N A
Sbjct: 92 WEPKEYGGVKMLHVPSDHIWRPDIVLYNNA 121
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 39.9 bits (89), Expect = 3e-05
Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 5/117 (4%)
Frame = +2
Query: 65 FCYQFLLTCAIASAAECENATSLSLMIDSLLATYDRDSPPDS--KIVVNLTLHL--RHAN 232
F + +LL C ++ T+L + L YD + P S +I N+T+ L +
Sbjct: 27 FGFSYLLNCK-----NYDHPTTLLKLKRYLFCEYDPNVRPISSHQIANNVTMQLLPKLME 81
Query: 233 IRESESTVRIQAXLQMNWIDKRLSWNAGEW-GCSTWLVSSERLWRPDVVLLNAAATT 400
+ S + + + + + W D LSW ++ G + V S+ +W PD+ + N+ T
Sbjct: 82 FDDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIWVPDISVYNSGDMT 138
Score = 29.5 bits (63), Expect = 0.046
Identities = 12/44 (27%), Positives = 21/44 (47%)
Frame = +3
Query: 438 TGSVSXIKRLDXSTPISMXLDNWXNDMQTCTFKFGSRMHNTDEM 569
+GSVS + + + +W D C FGS +H+ +E+
Sbjct: 154 SGSVSCVPSVKHVAKCATDFSSWPYDTHRCRINFGSWVHSGEEV 197
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 35.1 bits (77), Expect = 0.001
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 5/91 (5%)
Frame = +2
Query: 128 SLSLMIDSLLATYDRDSPPD----SKIVVNLTLHLRHAN-IRESESTVRIQAXLQMNWID 292
++++++++LL Y+ + P + VV + +R + E + + + +W D
Sbjct: 36 NITMVLENLLMNYENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRD 95
Query: 293 KRLSWNAGEWGCSTWLVSSERLWRPDVVLLN 385
RLS+ S + ER+WRPD N
Sbjct: 96 SRLSFLGPIKSLSLSIKMLERIWRPDTYFYN 126
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 34.7 bits (76), Expect = 0.001
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 9/91 (9%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQAXLQMNWIDKR 298
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 299 LSWN--AGEWGCSTWLVSSERLWRPDVVLLN 385
L +N G T L + R+W PD+ N
Sbjct: 95 LRFNDFGGRLKYLT-LTDASRVWMPDLFFSN 124
Score = 23.8 bits (49), Expect = 2.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 441 GSVSXIKRLDXSTPISMXLDNWXNDMQTCTFKFGSRMHNTDEMV 572
GSV R+ + M L + D Q C+ + S TD++V
Sbjct: 146 GSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLV 189
>DQ667195-1|ABG75747.1| 469|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 469
Score = 25.8 bits (54), Expect = 0.56
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +3
Query: 438 TGSVSXIKRLDXSTPISMXLDNWXNDMQTCTFKFGSRMHNTDEMV 572
+G V RL + + L+ + D+Q C F S HN +MV
Sbjct: 127 SGMVRLNTRLQATLNCGLRLEKFPFDVQECPLIFESWTHNVLDMV 171
>DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride
channel protein.
Length = 428
Score = 24.6 bits (51), Expect = 1.3
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 504 WXNDMQTCTFKFGSRMHNTDEMV 572
+ +D Q C + S H TDEM+
Sbjct: 170 YPHDTQECKLQMESLSHTTDEMI 192
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.8 bits (49), Expect = 2.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = +3
Query: 441 GSVSXIKRLDXSTPISMXLDNWXNDMQTCTFKFGSRMHNTDEMV 572
GSV R+ + M L + D Q C+ + S TD++V
Sbjct: 146 GSVLYSIRISLTLSCPMNLKLYPLDRQVCSLRMASYGWTTDDLV 189
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 23.4 bits (48), Expect = 3.0
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Frame = +2
Query: 194 IVVNLTLHLRHAN-IRESESTVRIQAXLQMNWIDKRLS-----WNAGEWGCSTWLVSSER 355
++V+ + + N I + R+ ++ +WI+ RL + G+ + +
Sbjct: 11 VLVDFNIFVADINSINVEDMDFRVDMFVRQSWIESRLDMPDYIFEEGDDYVTLPPEFFDS 70
Query: 356 LWRPDVVLLNA 388
LW+PD LNA
Sbjct: 71 LWQPDPYFLNA 81
>DQ667188-1|ABG75740.1| 383|Apis mellifera histamine-gated chloride
channel protein.
Length = 383
Score = 23.4 bits (48), Expect = 3.0
Identities = 8/29 (27%), Positives = 16/29 (55%)
Frame = +3
Query: 486 SMXLDNWXNDMQTCTFKFGSRMHNTDEMV 572
+M +++ +D Q C+ S H T ++V
Sbjct: 133 AMKFESYPHDTQICSMMIESLSHTTQDLV 161
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 22.6 bits (46), Expect = 5.3
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 337 PSAAAPLPCVPTQS 296
PSA AP+P +P S
Sbjct: 411 PSAGAPMPPIPNMS 424
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,424
Number of Sequences: 438
Number of extensions: 3942
Number of successful extensions: 67
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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