Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_P24
         (895 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   2.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   5.0  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    22   6.6  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    22   8.7  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    22   8.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    22   8.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   8.7  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -3

Query: 281 VPAHAHLVSDVRYQRSHGHFLLTASYDRSAKLWSNPAWH-PLRTLSGHDNKVMSADIXRG 105
           +P+ + + SD     S GH   ++S+   +K W+       L  L  HD  +  A    G
Sbjct: 379 MPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFG 438


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 276  GSRASGQRRPIPTKPRALPT 217
            G  ASG R P+P +P  +PT
Sbjct: 1356 GPSASGGR-PVPERPERVPT 1374


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 311 DLRRRSCLYTVPAHAHLVSDVRYQRSHGH--FLLTASYDRSA 192
           ++  RS L    A  ++VS   Y+ S  H  F +  SYD S+
Sbjct: 6   EIAARSFLLLSIASTYVVSVAGYKHSRRHRDFTVAESYDASS 47


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 435 PPHGSLRDVPRGSPGS 388
           PPH  LR  P   PG+
Sbjct: 111 PPHPRLRREPEAEPGN 126



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -2

Query: 435 PPHGSLRDVPRGSPGS 388
           PPH  LR  P   PG+
Sbjct: 137 PPHPRLRREPEAEPGN 152


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 122 ADIXRGQQTRGHVLLRQNLQVVGSGVDINK 33
           A I +  QTR H LL   L V    V +NK
Sbjct: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNK 154


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 122 ADIXRGQQTRGHVLLRQNLQVVGSGVDINK 33
           A I +  QTR H LL   L V    V +NK
Sbjct: 52  AGISKNGQTREHALLAFTLGVKQLIVGVNK 81


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 122 ADIXRGQQTRGHVLLRQNLQVVGSGVDINK 33
           A I +  QTR H LL   L V    V +NK
Sbjct: 68  AGISKNGQTREHALLAFTLGVKQLIVGVNK 97


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -3

Query: 122 ADIXRGQQTRGHVLLRQNLQVVGSGVDINK 33
           A I +  QTR H LL   L V    V +NK
Sbjct: 125 AGISKNGQTREHALLAFTLGVKQLIVGVNK 154


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,883
Number of Sequences: 438
Number of extensions: 4216
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28904421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)