Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_P10
(763 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 155 9e-39
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 72 1e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 70 3e-13
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 70 4e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 68 2e-12
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 43 5e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 41 2e-04
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 40 4e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 37 0.004
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.7
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 27 2.2
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch... 27 2.9
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 6.7
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 6.7
SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces... 25 8.9
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 25 8.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 155 bits (375), Expect = 9e-39
Identities = 70/76 (92%), Positives = 74/76 (97%)
Frame = -1
Query: 553 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 374
SGGTTMYPGIADRMQKEI ALAPS+MK+KI+APPERKYSVWIGGSILASLSTFQQMWISK
Sbjct: 300 SGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISK 359
Query: 373 QEYDESGPSIVHRKCF 326
QEYDESGP IV+RKCF
Sbjct: 360 QEYDESGPGIVYRKCF 375
Score = 111 bits (268), Expect = 8e-26
Identities = 50/60 (83%), Positives = 52/60 (86%)
Frame = -3
Query: 734 YEFPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 555
YE PDGQVITIGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+
Sbjct: 240 YELPDGQVITIGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVM 299
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 71.7 bits (168), Expect = 1e-13
Identities = 35/80 (43%), Positives = 55/80 (68%), Gaps = 6/80 (7%)
Frame = -1
Query: 550 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 380
GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+WI
Sbjct: 354 GGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQLWI 412
Query: 379 SKQEYDESGP---SIVHRKC 329
S+QEY+E G +++ ++C
Sbjct: 413 SRQEYEEHGSDRLALIEKRC 432
Score = 33.1 bits (72), Expect(2) = 1e-04
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 734 YEFPDGQVITIGNERFRCPEALFQP 660
+EFPDG + G ER++ PE LF P
Sbjct: 264 FEFPDGSRMMFGAERYQIPEHLFVP 288
Score = 27.9 bits (59), Expect(2) = 1e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 635 GIHETTYNSIMKCDVDIRKDLYANTVL 555
GI + N I +CDVDIR L N ++
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIV 352
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 70.1 bits (164), Expect = 3e-13
Identities = 31/60 (51%), Positives = 40/60 (66%)
Frame = -3
Query: 734 YEFPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 555
Y PDG+VI +G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY VL
Sbjct: 240 YTLPDGRVIKVGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVL 299
Score = 53.2 bits (122), Expect = 4e-08
Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 12/79 (15%)
Frame = -1
Query: 553 SGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWIGGSILAS 407
SGG++MY G+ R++KEI L P+ + K+KI P R+++V+IGG++LA
Sbjct: 300 SGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFIGGAVLAD 359
Query: 406 -LSTFQQMWISKQEYDESG 353
++ MW+SK E++E G
Sbjct: 360 IMAQNDHMWVSKAEWEEYG 378
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 69.7 bits (163), Expect = 4e-13
Identities = 31/76 (40%), Positives = 53/76 (69%)
Frame = -1
Query: 553 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 374
SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 305 SGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITS 364
Query: 373 QEYDESGPSIVHRKCF 326
+EY ++ +++ R+ F
Sbjct: 365 EEY-KNDQNVIFRRRF 379
Score = 69.3 bits (162), Expect = 6e-13
Identities = 29/60 (48%), Positives = 38/60 (63%)
Frame = -3
Query: 734 YEFPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 555
Y+ PD Q IT+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N VL
Sbjct: 245 YQLPDNQTITLGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVL 304
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 67.7 bits (158), Expect = 2e-12
Identities = 32/69 (46%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Frame = -1
Query: 553 SGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMWI 380
+GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W+
Sbjct: 350 TGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWV 409
Query: 379 SKQEYDESG 353
SKQEYDE G
Sbjct: 410 SKQEYDEVG 418
Score = 53.2 bits (122), Expect = 4e-08
Identities = 28/69 (40%), Positives = 35/69 (50%), Gaps = 9/69 (13%)
Frame = -3
Query: 734 YEFPDGQVITIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIR 582
+EFPDG G ERFR E LF PSF + G+HE Y SI+ CD ++R
Sbjct: 281 FEFPDGVTHKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELR 340
Query: 581 KDLYANTVL 555
L N V+
Sbjct: 341 SPLLNNIVV 349
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 42.7 bits (96), Expect = 5e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -1
Query: 550 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 371
GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I++
Sbjct: 327 GGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRS 385
Query: 370 EYDESGPSIVHRK 332
EY E G +I+ RK
Sbjct: 386 EYSEHGANIMTRK 398
Score = 39.5 bits (88), Expect = 5e-04
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = -3
Query: 716 QVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTV 558
QV+ + NERF PE LF PS + + GI E S+ +I+ L N V
Sbjct: 272 QVLNLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVV 324
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -1
Query: 553 SGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISK 374
+GG PG+ R+++E+T++ P I + W G S + F+ +++
Sbjct: 641 TGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTR 700
Query: 373 QEYDESGPSIV 341
+EY E GP +
Sbjct: 701 EEYLEKGPEYI 711
Score = 33.1 bits (72), Expect = 0.044
Identities = 13/47 (27%), Positives = 28/47 (59%)
Frame = -3
Query: 695 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVL 555
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N ++
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLI 640
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Frame = -1
Query: 553 SGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKYSVWIGGSI 416
SGG+T++ +R+Q+++ + + + +I+ ++ +VW GGS+
Sbjct: 333 SGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSL 392
Query: 415 LASLSTFQQMWISKQEYDESGPSIVHR 335
LA F +K +Y+E G SI R
Sbjct: 393 LAQTPEFGSYCHTKADYEEYGASIARR 419
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -3
Query: 710 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVL 555
I +G ERF PE F P + + E N + +D+RK LY N VL
Sbjct: 280 IDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVL 332
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 36.7 bits (81), Expect = 0.004
Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -1
Query: 550 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWI 380
GG +PG A +++ I + + I +I PP + ++ W G I + ++WI
Sbjct: 537 GGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSELWI 596
Query: 379 SKQEYDESGPSIVHRK 332
++ G ++ K
Sbjct: 597 KNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 433 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 332
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/65 (29%), Positives = 32/65 (49%)
Frame = -3
Query: 560 VLFRWYHHVPWNRRPYAKGNHSSRPIDNED*DHCSSREEVLRMDRWIDPRLPLYLPTDVD 381
VL RWY PW + KG+ + +E + SSR + + W+D YL +++D
Sbjct: 480 VLGRWYE--PW----FVKGDLN---YTSEVKERTSSRLSAVGSENWVDDDFYEYLLSEID 530
Query: 380 LETGV 366
+ + V
Sbjct: 531 MVSAV 535
>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/50 (24%), Positives = 23/50 (46%)
Frame = -3
Query: 677 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLFRWYHHVPW 528
EALF F + C ++ ++ +I K +Y +T +F + + W
Sbjct: 361 EALFVGHFGPIGVCAVYMAFLAKLLLSPDEIEKSIYESTTVFSTLNEIIW 410
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -2
Query: 441 TPYGSVDRSSPPSLPSNRCGSRNRSTTSLAPP 346
TP + PPS+PS+R R S ++ APP
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPP 254
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 508 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 398
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC5H10.05c |||FAD binding oxidoreductasde |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 8.9
Identities = 10/43 (23%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 632 IHETTYNSIMKCDVDIRKDLYANTVLFR---WYHHVPWNRRPY 513
+ ET + + ++ K L+AN ++++ W+ PW + Y
Sbjct: 38 VQETVVDEGYDENTEVEKILWANVIIYQWPGWWMGTPWKLKRY 80
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +3
Query: 552 EQYGVGVQVLTDVHVALHDGVICGLVDAA 638
EQY G Q++ + V + GVI L+ A
Sbjct: 456 EQYNWGYQIMPQIIVGIGGGVIANLLTVA 484
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,837,869
Number of Sequences: 5004
Number of extensions: 60122
Number of successful extensions: 214
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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