Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_P07
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    29   0.77 
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    28   1.3  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    27   3.1  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   5.4  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   5.4  
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    26   7.2  
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy...    25   9.5  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   9.5  

>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 16/38 (42%), Positives = 23/38 (60%)
 Frame = +3

Query: 105 VARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVDV 218
           +  ++Q A+ LG   RS  RC  KSSF+  +N P +DV
Sbjct: 30  ITPLHQQAL-LGRNGRSSKRCSPKSSFI--RNSPKIDV 64


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/78 (25%), Positives = 35/78 (44%)
 Frame = -3

Query: 353 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYVNIRTVLKDNKTAL 174
           K K+ D   V  K   +  +S   T+ +V +   YF   PF+ V+ +     +K + T  
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQL---LSMKTSDTLF 664

Query: 173 LSASIQASLPSSEIYRQL 120
           +      +  SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 596 VRRQGIDGNGC*VWGGWCMESGIDD 670
           V+R G D NG  +W  W     +DD
Sbjct: 495 VKRYGTDANGDPLWSEWFYNPDVDD 519


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/38 (28%), Positives = 16/38 (42%)
 Frame = -1

Query: 709 KPPSPAXSXTSXPIINPRFHTPTTPDLTSISINPLTPY 596
           +PPS A   +      P    P  P +  +  NP TP+
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF 282


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 464 KLRALLVVIPRILRSPPPTHPLIEDV 387
           KLR++L  I ++LR P P  PL+  +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 218 YVNIRTVLKDNKTALLSASIQASLPSSEIYRQLV 117
           Y N  TVL+D   A L + +Q S  SS+++  L+
Sbjct: 543 YYNCMTVLEDEVIAQLKSLLQYSKTSSQMFTTLM 576


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 469 ITSFAPY*SSFHAYSAPPLQLTPSSKTSS 383
           + SF PY S F A   P L ++PS+  +S
Sbjct: 302 LQSFHPYESLFSAGQPPSLPISPSTSQNS 330


>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 308

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -3

Query: 329 LVTHKELALKVSSIIGTRVYVFDPSCY 249
           +V H E  LKV  II T  Y  D S Y
Sbjct: 37  VVKHHEEFLKVCDIISTFTYQLDASIY 63


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 254 CYFSTPPFDTVLYVNIRTVLKDNKTALLSASI 159
           CY   P + + L  +I+T+L DN   ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,929,997
Number of Sequences: 5004
Number of extensions: 57898
Number of successful extensions: 166
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)