Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_P07
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 30 1.9
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 30 1.9
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 3.2
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 28 7.5
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 28 9.9
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937... 28 9.9
01_06_0146 + 26969011-26969995,26970878-26970930 28 9.9
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 30.3 bits (65), Expect = 1.9
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -1
Query: 706 PPSPAXSXTSXPIINPRFHTPTTPDLTSIS-INPLTPY*KEFAP 578
PP+P +S P P HTP+ P+ T S +P TP K +P
Sbjct: 618 PPTPESKASSPPPPAPEGHTPSPPESTPPSEKSPPTPESKASSP 661
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = -1
Query: 706 PPSPAXSXTSXPIINPRFHTPTTPDLT-SISINPLTPY*KEFAP 578
PP+P +S P P HTP+ P T +P TP + +P
Sbjct: 651 PPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSP 694
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 30.3 bits (65), Expect = 1.9
Identities = 36/111 (32%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Frame = -1
Query: 706 PPSPAXSXTSXPIINPRF--HTPTTPDL--TSISINPLTPY*KEFAPGVKASVVIRGSIS 539
P SP+ S TS P +P ++PT+P TS S +P +P ++P A S
Sbjct: 1671 PTSPSYSPTS-PSYSPTSPSYSPTSPSYSPTSPSYSPTSP---SYSPTSPAYSPTSPGYS 1726
Query: 538 VSHPLVTGHG*RGFAPLFPSE**ITSFAPY*SSFHAYSAPPLQLTPSSKTS 386
+ P + ++P PS S A Y S HAYS +L+P S+TS
Sbjct: 1727 PTSPSYSPTS-PNYSPTSPSY--NPSSAKY-SPSHAYSPSSPRLSPYSQTS 1773
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -3
Query: 239 PPFDTVLYVNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 60
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGY-ALLDPTWASQDNTSTAIGNIVA 1407
Query: 59 ILHSF 45
+LHSF
Sbjct: 1408 LLHSF 1412
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 724 SPLCIKPPSPAXSXTSXPIINPRFHTPTTPDL--TSISINPLTP 599
+P+ +KPPSP + P + P P L + ++ PL P
Sbjct: 4 TPISVKPPSPVAAAPPPPPVQVPVPPPPPPPLPPAAAAVEPLPP 47
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 275 VYVFDPSCYFSTPPFD-TVLYVNIRTVLK-DNKTALLSASIQAS 150
V + D SC TP FD T+ +N+ T K + A+L SI AS
Sbjct: 2535 VSILDSSCGMVTPIFDTTIANINLATHGKFETMNAVLICSISAS 2578
>02_02_0718 -
13290764-13290897,13292375-13293041,13293364-13293719,
13294559-13294629,13295326-13295336
Length = 412
Score = 27.9 bits (59), Expect = 9.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 440 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 351
+P++L+SPP T+ IED + + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 706 PPSPAXSXTSXPIINPRFHTPTTPDLTSISINPLTP 599
PP+P + T P I+P+ TP P L + + P TP
Sbjct: 25 PPTPHPA-TDPPPISPQNPTPPPPPLPASAAAPTTP 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,773,894
Number of Sequences: 37544
Number of extensions: 457089
Number of successful extensions: 1232
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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