Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_P02
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc...    28   1.8  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    27   3.1  
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom...    26   5.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   7.2  

>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1063

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 750 APTSXRXXDRXAFIXGRLYPMICRRSKMSLRNKVTLLQNLHTPPS*PMQ 604
           AP +     R   + GR+ P + ++   +L N++T L   +  P  PMQ
Sbjct: 181 APNTEANQQRSGSVPGRIVPALTQQQLNNLCNQITALLARNGNPPIPMQ 229


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
 Frame = -2

Query: 658 K*GDTFTKLAYAPVMTYASVV-FAHAARI--HLKSFQIIQSRFCRIAVGAPWFVRNVDLH 488
           K GDT   L+ +  ++ A  +   +  R+  HL+ F + + +   +   A  F+ N D  
Sbjct: 204 KVGDTVASLSLSSRLSKADKIRHIYGPRVASHLRDFSLGEGQSSIVGFSANGFISNADFQ 263

Query: 487 D---DLDLESISKYLQSASMRH 431
           D   +L L   ++ ++S  +RH
Sbjct: 264 DKKSNLILFINNRLVESVELRH 285


>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 450 SRRPCATSIKRHDT-RTLSSWPPVTTFPILRTEWKAVDV 337
           SR      I R DT + + S PPVT    ++  WKA+D+
Sbjct: 39  SRSTPINPIIRSDTIQLVISCPPVTYSDEIQVPWKAIDL 77


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 331 KHVISDPPDPLTVLLGTSSTGH 266
           +H++ +PP PLTVL      GH
Sbjct: 499 RHILDNPPKPLTVLDIYFQIGH 520


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,856,933
Number of Sequences: 5004
Number of extensions: 54445
Number of successful extensions: 165
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)