Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_O16
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    29   1.0  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   4.0  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    26   5.4  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.4  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.4  
SPCC645.11c |mug117||meiotically upregulated gene Mug117|Schizos...    25   9.4  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    25   9.4  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.4  

>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = +2

Query: 287 PRYTFPQSGRGNAVYHHPAS-YCG 355
           P Y   +SG+G+ VY HP S  CG
Sbjct: 49  PYYFIEKSGKGSVVYFHPTSDLCG 72


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +1

Query: 301 PPERS----GERGLPSPGFLLRVSVQSTPPL 381
           PP+ S    G  G PSP   L VS  +TPPL
Sbjct: 234 PPKTSMPPFGSAGSPSPNRSLNVSNNTTPPL 264


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 196 GMDVMCSASTLSRRFNSPDWAPARSEVGRRL*AAGVF 86
           G+ V+ +++ L  RF  P+W P R+ +   +   G+F
Sbjct: 197 GIGVIVASTCLLDRFRQPEWRPYRALIFVLMGLFGIF 233


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +3

Query: 198  PSHGTPDRWPPAKRPPVPSXQRAESPL*WRRVTPSPRAVGGTRSTITRLPIAGERAEHAT 377
            PS G P   PP+  PPVP+      P+      P P A    ++     P + E    +T
Sbjct: 1203 PSVGVPPVPPPSTAPPVPTPSAGLPPV------PVPTA----KAPPVPAP-SSEAPSVST 1251

Query: 378  PRLG-PSPH 401
            PR   PSPH
Sbjct: 1252 PRSSVPSPH 1260



 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 174  AEHITSIPPSHGTPDRWPPAKRPPVPSXQRAESPL 278
            +  I SIP   G P    P+  PPVP    A  P+
Sbjct: 1070 SSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPV 1104



 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +3

Query: 183  ITSIP-PSHGTPDRWPPAKRPPVPSXQRAESPL 278
            I  +P P+ G P   PP++ PPVP       P+
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPV 1210


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 138 QSGLLKRRDRVDAEHITSIPPSHGTPDRWPPAKRP 242
           +  +LK+ D    +H+ S P     PD++ P   P
Sbjct: 3   EESILKKCDSSSIKHVPSTPLETNCPDKYNPKTWP 37


>SPCC645.11c |mug117||meiotically upregulated gene
           Mug117|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 186

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 326 VYHHPASYCG*ACRARHPSSGSLPAQNG 409
           +YH  +SY   +C A +   G  PA+ G
Sbjct: 98  IYHGYSSYTASSCTAIYECEGDYPARTG 125


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 138 QSGLLKRRDRVDAEHITSIPPSHGTPDRWPPAKRP 242
           +  +LK+ D    +H+ S P     PD++ P   P
Sbjct: 3   EESILKKCDSSSIKHVPSTPLETNCPDKYNPKTWP 37


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +3

Query: 138 QSGLLKRRDRVDAEHITSIPPSHGTPDRWPPAKRP 242
           +  +LK+ D    +H+ S P     PD++ P   P
Sbjct: 3   EESILKKCDSSSIKHVPSTPLETNCPDKYNPKTWP 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,899
Number of Sequences: 5004
Number of extensions: 46229
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)