Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_O14
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    29   0.73 
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    28   1.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    27   2.2  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.9  
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu...    27   2.9  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.1  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    26   6.8  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    25   9.0  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    25   9.0  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    25   9.0  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.0  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +1

Query: 106 EERGRSREPRTSPSTNWSTETTPLXRRAGLSSALAKPAQLNDYRLNPNELLHSG*AETQV 285
           +E+ +S+ PR +P T+ + +           S+LAK   L   R  P ELL SG   T  
Sbjct: 386 KEKEKSKAPRVTPLTHKTNDDEANHSETSSGSSLAKKPILK--RRTPQELLLSGRDLTPW 443

Query: 286 PPCAR 300
           P   R
Sbjct: 444 PQIRR 448


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 383 PRLVRGAPEPQRTTTPQDL-SAEHRAPPHPAIDGP 484
           PR + G P PQ+ +    + S+  + PP P+  GP
Sbjct: 101 PRKLPGVPAPQKQSEASSVNSSTEKLPPPPSYPGP 135


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +2

Query: 305  GPPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEPQRTTTPQDLSAEHRAPPHPA 472
            GPPS APT  L  AG   G      +P +    P   + T    LS+   APP  A
Sbjct: 1894 GPPSAAPTSALPPAGPPAGATAISGNPGMPAPVPLTGKETA-VPLSSMPNAPPSVA 1948


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 85  SDSAPPVEERGRSREPRTSPSTNWSTETTPLXRRAGLSSAL 207
           ++ + P     RSR P +   T W  E   L +R  +S ++
Sbjct: 277 TEMSTPNSNHSRSRTPSSKKRTRWGEEIIDLSKRRAVSPSI 317


>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
           5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 228

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 125 RLLPLSSTGGAESDITRSDPRRQGIRKE*DSPSIP 21
           RLLP+SST  +      + P+   IR   DSP +P
Sbjct: 17  RLLPVSSTASSLKGSMMTIPKFTSIRTYTDSPEMP 51


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +2

Query: 308 PPSPAPTPMLRWAGSATGDFFPLSSPRLVRGAPEPQRTTTP 430
           PP PAP    R A   + +   +SSP  V   P  QR T P
Sbjct: 222 PPPPAPPKPRRLAARTSSNSSGVSSPTSV--PPPVQRNTRP 260


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 359 GDFFPLSSPRLVRGAPEPQRTTTPQDLSAEHRAP 460
           G   P + P++ + A E  +TT PQDLS    AP
Sbjct: 71  GSTRPSAKPQVEKTAVEV-KTTEPQDLSTAETAP 103


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 91  SAPPVEERGRSREPRTSPSTNWSTETTP 174
           +AP +     S EP T PST   TE  P
Sbjct: 121 AAPQLNSPSHSYEPTTFPSTTSITENLP 148


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +1

Query: 88  DSAPPVEERGRSREPRTSPSTNWSTETTPLXRRAGLSSALAKPAQLNDYRL 240
           DSA  ++   ++ +   SPS +    TTP  +R   SS    P +   Y L
Sbjct: 19  DSAALIDCTNKTNQREHSPSFSIEIPTTPSRKRTLASSHFQTPTKRIKYEL 69


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +2

Query: 275 RPRYRHVRAIGPPSPAPTPMLRWAGSATGDFFPLSSP---RLVRGAPEPQRTTTPQDLSA 445
           R  Y+    +   +P     LR   S T  + P+++    R  RGA      +TP+ + +
Sbjct: 86  RQNYQLAAKLSKKAPVDLHPLRPVRSQTPAYTPMTTRMMYRQTRGAQSEVNLSTPKQIYS 145

Query: 446 EHRAP 460
           +H  P
Sbjct: 146 KHSPP 150


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 267 LSGDPGTAMCAP*ARLRRLPPQCYVGRDLPPGTSSPS 377
           L GD G ++ AP   +  +PP       L  GTS  S
Sbjct: 479 LDGDTGVSIYAPGGAITSVPPYSLQNSQLMNGTSMSS 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,329
Number of Sequences: 5004
Number of extensions: 58945
Number of successful extensions: 187
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)