Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_O09
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   123   3e-29
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   120   3e-28
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.061
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|...    30   0.43 
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.3  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  123 bits (297), Expect = 3e-29
 Identities = 61/107 (57%), Positives = 69/107 (64%)
 Frame = -3

Query: 734 GXFXXRXFIXXIQXAXREXXFLIVXDPAQDHXPIXEASYVNIPVIALCXTDSPLRFVDIX 555
           G F    F   I    RE   ++V DP  D   I EAS+VNIPVIALC TDS L  VDI 
Sbjct: 103 GRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIA 162

Query: 554 IPCNTKXSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 414
           IP N K   SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYRDP
Sbjct: 163 IPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  120 bits (288), Expect = 3e-28
 Identities = 60/107 (56%), Positives = 68/107 (63%)
 Frame = -3

Query: 734 GXFXXRXFIXXIQXAXREXXFLIVXDPAQDHXPIXEASYVNIPVIALCXTDSPLRFVDIX 555
           G F    F   I    RE   +IV DP  D   I EAS+VNIPVIALC TDS L  VD+ 
Sbjct: 104 GRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVA 163

Query: 554 IPCNTKXSHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 414
           IP N K   SIGL W+LLAREVLRLRG + R   W+V+ DL+FYRDP
Sbjct: 164 IPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -3

Query: 671 LIVXDPAQDHXPIXEASYVNIPVIALCXTDSPLRFVDIXIPCNTKXSHSIGLMWWLLAR 495
           +++ +P ++     EA   ++P I +  TD+  R V   IP N        L+  LL+R
Sbjct: 183 MVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLLSR 241


>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 194

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +1

Query: 409 LQGSR*KNKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 528
           L  S+  N+S+T +++ SR    ST RS STS AN H  K  E
Sbjct: 99  LTSSKAANRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 524 IGLMWWLLAREVLRLRGVLPRDQRWD 447
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,370
Number of Sequences: 5004
Number of extensions: 35712
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)