Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_O09
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   120   1e-27
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   120   1e-27
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.2  
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789...    29   4.2  
06_03_0543 + 21967787-21970261                                         29   5.5  
05_03_0609 - 16161801-16162848,16163525-16163682,16163806-161638...    29   5.5  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.3  
12_01_0754 - 6816789-6816886,6816922-6817722,6818377-6819058           28   7.3  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  120 bits (290), Expect = 1e-27
 Identities = 54/100 (54%), Positives = 68/100 (68%)
 Frame = -3

Query: 713 FIXXIQXAXREXXFLIVXDPAQDHXPIXEASYVNIPVIALCXTDSPLRFVDIXIPCNTKX 534
           F   +Q +  E   LI+ DP  DH PI E++  NIP IA C TDSP+R+VDI IP N K 
Sbjct: 112 FTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKG 171

Query: 533 SHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 414
             SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDP
Sbjct: 172 KQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  120 bits (290), Expect = 1e-27
 Identities = 54/100 (54%), Positives = 69/100 (69%)
 Frame = -3

Query: 713 FIXXIQXAXREXXFLIVXDPAQDHXPIXEASYVNIPVIALCXTDSPLRFVDIXIPCNTKX 534
           F   +Q +  E   LI+ DP  DH PI E++  NIP IA C TDSP+R+VDI IP N K 
Sbjct: 112 FTNQLQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKG 171

Query: 533 SHSIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDP 414
            +SIG ++WLLAR VL++RG +    +WDV+VDLFFYRDP
Sbjct: 172 RNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 266 TRCSSCFWSTPCSRRMVCPGTR*VEHN 186
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 266 TRCSSCFWSTPCSRRMVCPGTR 201
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>01_07_0027 -
           40578075-40578437,40578647-40578767,40578852-40578952,
           40579176-40579451,40579485-40579805,40581609-40581623,
           40581969-40582295,40583287-40583538
          Length = 591

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +3

Query: 426 KKQINHNIPALVTGKHTTKPQHFTCQQPPHQTNRVG 533
           K Q   NIP LVT   TTK + F    PPH    +G
Sbjct: 465 KPQAKPNIPRLVTSTSTTKLERF---PPPHLDASIG 497


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 518 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 429
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>05_03_0609 -
           16161801-16162848,16163525-16163682,16163806-16163835,
           16164242-16164323,16164599-16164672
          Length = 463

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 501 QQPPHQTNRVGXLGVAWDXNVHKS*WGVCXAQS 599
           + PP Q  RVG  GV      H   WG C  +S
Sbjct: 17  EMPPVQPGRVGLWGVTVRCRDHGRCWGFCWVES 49


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 266 TRCSSCFWSTPCSRRMVCPGTR*VEHN 186
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>12_01_0754 - 6816789-6816886,6816922-6817722,6818377-6819058
          Length = 526

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -1

Query: 508 GCWHVKC*GFVVCFPVTSAGMLWLICFFTVTPE 410
           G WH KC    VC  +   G+L  I FF +TPE
Sbjct: 499 GIWHQKC---KVCNDI---GLLTFIVFFKITPE 525


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,539,836
Number of Sequences: 37544
Number of extensions: 246660
Number of successful extensions: 602
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)