Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_O08
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.31 
07_03_1140 - 24258627-24258849,24259967-24260089,24260200-242609...    31   0.72 
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   2.9  
11_01_0731 - 6060680-6060982                                           29   3.8  
03_05_0183 - 21681673-21682524                                         29   3.8  
10_06_0054 - 10122703-10122983,10123549-10125376                       28   6.7  
01_06_0695 - 31292622-31293317                                         28   6.7  
06_01_0027 - 271199-271424,271628-272095,272721-273018,273133-27...    28   8.8  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +3

Query: 75  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 203
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>07_03_1140 -
           24258627-24258849,24259967-24260089,24260200-24260921,
           24260945-24261073,24261484-24261714
          Length = 475

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +1

Query: 643 CHKPVIPGGTFLAPLAKTL 699
           C KP+IP GT +APL K +
Sbjct: 307 CRKPIIPSGTMVAPLVKKI 325


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 431 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 333
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>11_01_0731 - 6060680-6060982
          Length = 100

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -3

Query: 431 GHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGQGYA 312
           G   HALG   GG +  +AG C      E ++   G G A
Sbjct: 8   GSATHALGSDNGGRRAAAAGACDGDVAGEEAMGHGGGGLA 47


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 643 SQAFIATLLFDPSMSALPIIAKQNSPS 563
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>10_06_0054 - 10122703-10122983,10123549-10125376
          Length = 702

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = -3

Query: 443 NRSFGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGQGYAHCGAPRVG 288
           ++S  HLV  LG AAG  K+     CL     E  +          G+P VG
Sbjct: 318 DKSVAHLVKKLGGAAGNGKVQVKHPCLQTGYKEDYICSYCHPLKLDGSPSVG 369


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +3

Query: 27  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 161
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


>06_01_0027 -
           271199-271424,271628-272095,272721-273018,273133-273343,
           273427-274124,274921-274969,276059-276112,276244-276275,
           276319-276484,276563-276628,276717-276812,276868-276957,
           277302-277398,277496-277575,277709-277753,278006-278134,
           278593-278722,278888-279222,279918-280053,280149-280328,
           280422-280679,280752-281137
          Length = 1409

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -2

Query: 390 EATIRG-IMPERL*GRSQPSRI-RXRICSLWSPESREALNN 274
           EATI+  I  + L G  +P+ + R  + ++W+P SRE+ NN
Sbjct: 415 EATIKSDIDTKDLEGYVRPNFLPRITLANIWAPASRESCNN 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,214,916
Number of Sequences: 37544
Number of extensions: 424828
Number of successful extensions: 1311
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1311
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)