Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_O07
(773 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0686 - 30900748-30902167,30903442-30904742 36 0.027
11_01_0066 - 536281-537196,537397-537452 31 0.77
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 31 0.77
07_03_0792 - 21541301-21542143,21542426-21542661,21543177-215433... 31 1.0
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336... 31 1.3
12_02_0299 - 17051570-17052474,17053542-17053755 30 1.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 1.8
01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647 30 2.3
08_01_0059 - 394001-394708 29 5.4
03_01_0515 - 3864796-3865425 29 5.4
11_01_0385 + 2915532-2916482 28 7.2
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 7.2
06_03_0310 - 19453047-19453160,19453240-19453338,19453441-194535... 28 9.5
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 9.5
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 36.3 bits (80), Expect = 0.027
Identities = 20/59 (33%), Positives = 23/59 (38%)
Frame = +3
Query: 516 PWPXXXASXXPXGXXGPXPXXXARXPPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXPPG 692
P P A+ P GP P A+ PP P P P P P P + PP P G
Sbjct: 328 PPPPPKAAPPPPPPKGPPPPPPAKGPP--PPPPPKGPSPPPPPPPGGKKGGPPPPPPKG 384
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +3
Query: 534 ASXXPXGXXGPXPXXXARXPPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXPPG 692
AS P P P A PP P P P P + PP P G
Sbjct: 309 ASPAPPPPPPPKPAAAAPPPPPPPKAAPPPPPPKGPPPPPPAKGPPPPPPPKG 361
>11_01_0066 - 536281-537196,537397-537452
Length = 323
Score = 31.5 bits (68), Expect = 0.77
Identities = 17/55 (30%), Positives = 19/55 (34%)
Frame = +3
Query: 522 PXXXASXXPXGXXGPXPXXXARXPPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXP 686
P + P P P A PP SP P R P+P P PP P
Sbjct: 216 PPPSIATPPPSPASPPPPSTATPPPPSPTPTTTRASPTPP-PIPTATVRPPPPLP 269
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/53 (28%), Positives = 19/53 (35%)
Frame = +3
Query: 564 PXPXXXARXPPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXPPGXXXSXSLXAP 722
P P + PP P P P P P + PP PP + +L P
Sbjct: 340 PRPVQPSNAPPPPPPPPPPPPPPPPPKLNTAPKPPPPPPPPPSVPSNNNLPKP 392
>07_03_0792 -
21541301-21542143,21542426-21542661,21543177-21543373,
21543459-21544173,21544250-21544892,21545970-21546139,
21546442-21546943
Length = 1101
Score = 31.1 bits (67), Expect = 1.0
Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Frame = +3
Query: 516 PWPXXXASXXPXGXXGPXPXXXARXPPXSP---WPXPXRXXPSPXLPXXXXRXXXXPPXP 686
P P AS P P P A PP P P P R P P +P + PP
Sbjct: 575 PMPPLKASPVPPPEPSPPPAPKAAPPPPPPKSTGPGPPR-PPPPAMP-GSSKTRPPPPLK 632
Query: 687 PG 692
PG
Sbjct: 633 PG 634
>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
33643-34147,34250-34358,34436-34548,34619-34806,
35481-36129,36169-36691,36760-36911,37042-37141,
37301-37416
Length = 1530
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/55 (29%), Positives = 18/55 (32%)
Frame = +3
Query: 522 PXXXASXXPXGXXGPXPXXXARXPPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXP 686
P S P P P + PP P P P P P P + PP P
Sbjct: 1158 PPLPPSPPPATPPPPPPLSPSLPPPPPPPPLPSGPPPQPAPPPLPIQPPPIPPPP 1212
>12_02_0299 - 17051570-17052474,17053542-17053755
Length = 372
Score = 30.3 bits (65), Expect = 1.8
Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Frame = +3
Query: 564 PXPXXXARXPPXSPWPX-PXRXXPSPXLPXXXXRXXXXPPXPP 689
P P A P PWP P P P LP PP PP
Sbjct: 253 PSPPPPAFPFPLPPWPWAPPPAFPFPHLPPIFSPPSPPPPPPP 295
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/58 (32%), Positives = 20/58 (34%)
Frame = +3
Query: 516 PWPXXXASXXPXGXXGPXPXXXARXPPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXPP 689
P P A+ P P P P SP P P P P LP PP PP
Sbjct: 535 PSPSPTAAAPPPPPP-PPPPPSGNKPAFSP-PPPPPPPPPPPLPQSNYASSQPPPPPP 590
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 591 PPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXPP 689
PP P P R P P P + PP PP
Sbjct: 638 PPPPPPSLPNRLVPPPPAPGIGNKFPAPPPPPP 670
>01_05_0562 - 23307526-23307875,23308149-23308452,23308543-23308647
Length = 252
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/49 (32%), Positives = 18/49 (36%)
Frame = +3
Query: 564 PXPXXXARXPPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXPPGXXXSXS 710
P P + P P P P P P P + PP PPG S S
Sbjct: 201 PKPGPKPKPKPPKPGPKPKPGPPQPWWPIPFPK----PPCPPGADGSSS 245
>08_01_0059 - 394001-394708
Length = 235
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +3
Query: 564 PXPXXXARXPPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXPP 689
P P A PP +P P P R P P P PP PP
Sbjct: 4 PPPPRRAPPPPATPPPPPRRAPPPPSPP-------IRPPPPP 38
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = +3
Query: 603 PWPXPXRXXPSPXLPXXXXRXXXXPPXPP 689
P P P R P P P R PP PP
Sbjct: 3 PPPPPRRAPPPPATPPPPPRRAPPPPSPP 31
>03_01_0515 - 3864796-3865425
Length = 209
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/42 (33%), Positives = 14/42 (33%)
Frame = +3
Query: 564 PXPXXXARXPPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXPP 689
P P PP P P P P LP PP PP
Sbjct: 62 PPPAAGPLMPPPPPPPSVTSSPPPPPLPPPPPPPAASPPPPP 103
>11_01_0385 + 2915532-2916482
Length = 316
Score = 28.3 bits (60), Expect = 7.2
Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Frame = +3
Query: 522 PXXXASXXPXGXXGPXPXXXARXPPXSPWPXPXRXXP--------SPXLPXXXXRXXXXP 677
P A P P P + PP WP P P P +P P
Sbjct: 233 PPTPAWPQPGNKWPPLPPFPSHPPPTPAWPHPGNQWPPLPPFPFHPPPMPAWPHPGNQWP 292
Query: 678 PXPP 689
P PP
Sbjct: 293 PLPP 296
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/33 (36%), Positives = 13/33 (39%)
Frame = +3
Query: 591 PPXSPWPXPXRXXPSPXLPXXXXRXXXXPPXPP 689
PP P P P P P P + PP PP
Sbjct: 358 PPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPP 390
>06_03_0310 -
19453047-19453160,19453240-19453338,19453441-19453513,
19453598-19453708,19453795-19453956,19454064-19454340,
19454542-19455160,19455256-19455471
Length = 556
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/42 (35%), Positives = 17/42 (40%)
Frame = +3
Query: 522 PXXXASXXPXGXXGPXPXXXARXPPXSPWPXPXRXXPSPXLP 647
P A P P P A PP +P P P R P+P P
Sbjct: 160 PQDPAPSLPHAPAPPPPQAPAPTPPQAPAPTPPR-APTPTPP 200
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/33 (39%), Positives = 13/33 (39%)
Frame = +3
Query: 582 ARXPPXSPWPXPXRXXPSPXLPXXXXRXXXXPP 680
A PP P P P R PSP P PP
Sbjct: 74 AASPPPPPPPPPPRNSPSPPKPPSQAAQSPLPP 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,546,819
Number of Sequences: 37544
Number of extensions: 143242
Number of successful extensions: 713
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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