Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_N24
         (794 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   239   4e-64
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   234   9e-63
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    89   9e-19
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    52   1e-07
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    31   0.25 
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   5.4  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   9.4  

>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  239 bits (584), Expect = 4e-64
 Identities = 105/133 (78%), Positives = 119/133 (89%)
 Frame = -3

Query: 531 PVMARXMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 352
           P   R MA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP  VPG 
Sbjct: 311 PRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGS 370

Query: 351 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 172
            +AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 371 GIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 430

Query: 171 ALEKDYEEVGMDS 133
           ALE+DYEEVG DS
Sbjct: 431 ALERDYEEVGQDS 443



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -2

Query: 574 NACIEPANQMVKCDPRHGK 518
           N C EP NQMVKCDPR G+
Sbjct: 297 NQCFEPYNQMVKCDPRTGR 315


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  234 bits (573), Expect = 9e-63
 Identities = 104/133 (78%), Positives = 117/133 (87%)
 Frame = -3

Query: 531 PVMARXMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 352
           P   R MA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI  +PP  + G 
Sbjct: 307 PRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGS 366

Query: 351 DLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLA 172
           ++AKV RAVCMLSNTT+IAEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLA
Sbjct: 367 EIAKVDRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLA 426

Query: 171 ALEKDYEEVGMDS 133
           ALE+DYEEVG DS
Sbjct: 427 ALERDYEEVGQDS 439



 Score = 37.1 bits (82), Expect = 0.003
 Identities = 14/19 (73%), Positives = 15/19 (78%)
 Frame = -2

Query: 574 NACIEPANQMVKCDPRHGK 518
           N C EP NQMVKCDPR G+
Sbjct: 293 NQCFEPYNQMVKCDPRAGR 311


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score = 88.6 bits (210), Expect = 9e-19
 Identities = 48/137 (35%), Positives = 75/137 (54%), Gaps = 3/137 (2%)
 Frame = -3

Query: 537 ATPVMARXMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVP 358
           A P   R +    L+RG V  K+V+  I +++TK +  FV+W P      +   PP    
Sbjct: 303 ADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK--- 359

Query: 357 GGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR-- 184
             DL   + +   + N+T+I E + RL  +F  M+ ++AF+HWY GEGM+E EF+EA   
Sbjct: 360 --DL---KMSATFIGNSTSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESN 414

Query: 183 -EDLAALEKDYEEVGMD 136
             DL +  + Y+E G+D
Sbjct: 415 MNDLVSEYQQYQEAGID 431



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -2

Query: 715 NXDXXRXAKIDXVXYPRNXXHSGHVXXXSSXPENGLQATXFSXPRSHNACIEPANQMVKC 536
           N D  + A ++ V +PR           ++   +  QA   S P       +  N MV  
Sbjct: 247 NSDLRKLA-VNMVPFPRLHFFMVGFAPLAAIGSSSFQAV--SVPELTQQMFDANNMMVAA 303

Query: 535 DPRHGK 518
           DPRHG+
Sbjct: 304 DPRHGR 309


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 52.0 bits (119), Expect = 1e-07
 Identities = 31/119 (26%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
 Frame = -3

Query: 498 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 319
           + +G+  P DV+ ++  I+ +R   F+ W P   +V ++ + P +     ++ +     M
Sbjct: 323 IIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----M 377

Query: 318 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 151
           L+N T+IA  + R   ++D +  + AF+  Y  E + E    EF  +R+ +A L  +YE
Sbjct: 378 LANHTSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -1

Query: 491 VVTSYPRM*TRPSLPSKPSVLSNSSTGVQPVSRSVSTTSHPPWCP 357
           VV   P +  RP++P  P  LS     V PV+  V +   PP  P
Sbjct: 552 VVPEAPSVPQRPAVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAP 596


>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 628

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -1

Query: 455 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 369
           +LP KPS+   +++S   V+P S   STTS+P
Sbjct: 5   TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 458 PSLPSKPSVLSNSST--GVQPVSRSVSTTSHPPW 363
           P  PS+P+++SN ST  G+Q V   V   +   W
Sbjct: 531 PISPSRPALISNISTKKGIQVVGNMVYDPTRLRW 564


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,837
Number of Sequences: 5004
Number of extensions: 50514
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)