Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_N13
(778 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 223 2e-59
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 135 8e-33
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 134 1e-32
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 109 6e-25
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 104 2e-23
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 91 2e-19
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 27 3.0
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 5.2
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 26 6.9
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.2
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 25 9.2
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 223 bits (546), Expect = 2e-59
Identities = 109/209 (52%), Positives = 142/209 (67%), Gaps = 1/209 (0%)
Frame = -3
Query: 746 FPLDPQXAKMXIASCNHNXSXGDXFHHCHAVSAAVLX*DXNEARKAADEXXMRFAHIDGD 567
FPLDP A M I S S + +S + N ARK ADE +F H DGD
Sbjct: 502 FPLDPNLAVMLIRSPEFYCS-NEVLSLTALLSVPNVFVRPNSARKLADEMRQQFTHPDGD 560
Query: 566 HLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSK 387
HLTLLNVYHA+K WC+++F+++R+L S DNVR+QL R M+R ++ ST F K
Sbjct: 561 HLTLLNVYHAYKSGEGTADWCWNHFLSHRALISADNVRKQLRRTMERQEVELISTPFDDK 620
Query: 386 DYYINIRKALVNGFFMQVAHLERTG-SYLTVKDNQVVQLHPSTCLDHKPDWVIYNEFVLT 210
+YY+NIR+ALV+GFFMQVA G +Y+T+KDNQVV LHPS L P+WV+YNEFVLT
Sbjct: 621 NYYVNIRRALVSGFFMQVAKKSANGKNYVTMKDNQVVSLHPSCGLSVTPEWVVYNEFVLT 680
Query: 209 TKNYIRTVTDIKPEWLLKIAPQYYELGNF 123
TK++IR VT I+PEWL+++AP YY+L +F
Sbjct: 681 TKSFIRNVTAIRPEWLIELAPNYYDLDDF 709
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 135 bits (326), Expect = 8e-33
Identities = 76/212 (35%), Positives = 115/212 (54%), Gaps = 2/212 (0%)
Frame = -3
Query: 746 FPLDPQXAKMXIASCNHNXSXGDXFHHCHAVSAAVLX*DXNEARKAADEXXMRFAHIDGD 567
FP DP +K IAS + A+ L + AD+ F GD
Sbjct: 837 FPTDPMLSKSLIASSKYGCVEEVLSIVSMLGEASSLFYRPKDKIMEADKARANFTQPGGD 896
Query: 566 HLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSK 387
HLTLL++++ + +W +NF+ Y+SL +VR QL+ + +R ++ + S
Sbjct: 897 HLTLLHIWNEWVDTDFSYNWARENFLQYKSLCRARDVRDQLANLCERVEIELVTNSSESL 956
Query: 386 DYYINIRKALVNGFFMQVAHLERTG-SYLTVKDNQVVQLHPSTCL-DHKPDWVIYNEFVL 213
D I+KA+ G+F A L+R+G SY TVK NQ V +HPS+ + + KP +IY E VL
Sbjct: 957 D---PIKKAITAGYFSNAARLDRSGDSYRTVKSNQTVYIHPSSSVAEKKPKVIIYFELVL 1013
Query: 212 TTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQ 117
TTK Y R +T+I+PEWLL+I+P Y++ N +
Sbjct: 1014 TTKEYCRQITEIQPEWLLEISPHYFKPENIEE 1045
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 134 bits (325), Expect = 1e-32
Identities = 73/212 (34%), Positives = 119/212 (56%), Gaps = 2/212 (0%)
Frame = -3
Query: 746 FPLDPQXAKMXIASCNHNXSXGDXFHHCHAVSAAVLX*DXNEARKAADEXXMRFAHIDGD 567
FP++PQ +K+ I S S + +S + E ++ AD +FA+ + D
Sbjct: 929 FPMEPQLSKVLITSVELGCSE-EMLSIIAMLSVPNIWSRPREKQQEADRQRAQFANPESD 987
Query: 566 HLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSK 387
HLTLLNVY +K N +WCY+++I R ++ ++VR+QL R+MDR+ S +
Sbjct: 988 HLTLLNVYTTWKMNRCSDNWCYEHYIQARGMRRAEDVRKQLIRLMDRYRHPVVSCGRKRE 1047
Query: 386 DYYINIRKALVNGFFMQVAHLE-RTGSYLTVKDNQVVQLHPSTCLDHK-PDWVIYNEFVL 213
I +AL +G+F VA + G Y T+ +N V +HPS L K +WVIY+E +
Sbjct: 1048 ----LILRALCSGYFTNVAKRDSHEGCYKTIVENAPVYMHPSGVLFGKAAEWVIYHELIQ 1103
Query: 212 TTKNYIRTVTDIKPEWLLKIAPQYYELGNFPQ 117
T+K Y+ TV+ + P+WL+++AP +++ N Q
Sbjct: 1104 TSKEYMHTVSTVNPKWLVEVAPTFFKFANANQ 1135
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 109 bits (261), Expect = 6e-25
Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 5/206 (2%)
Frame = -3
Query: 743 PLDPQXAKMXIASCNHNXSXGDXFHHCHAVSAAVLX*DXNEARKAADEXXMRFAHIDGDH 564
PL P A+ +A+ HN + +S + E R A E ++F H +GD
Sbjct: 514 PLLPSLARAVLAAREHNC-LSEVIDVVSCLSTDSMFLFPQEKRDEAIEARLKFLHSEGDL 572
Query: 563 LTLLNVYHAFKQNMEDPH--WCYDNFINYRSLKSGDNVRQQLSR--IMDRFNLKRTSTEF 396
LT LN + ++ D WC NFIN R+LK+ ++R+QL + D + L +S E
Sbjct: 573 LTCLNALRQYLESSHDSRKQWCSQNFINRRALKTILDIRKQLREHCLKDGWELN-SSPEV 631
Query: 395 TSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTCL-DHKPDWVIYNEF 219
S+ N+ + ++G+ A L GSY T+ NQ + +HPS+ L K + ++Y+E
Sbjct: 632 NSE----NLLLSFLSGYITNTALLHPDGSYRTIIGNQTISIHPSSSLFGKKVEAIMYHEL 687
Query: 218 VLTTKNYIRTVTDIKPEWLLKIAPQY 141
V TTK+Y+R V+ I+ WL +AP Y
Sbjct: 688 VFTTKSYVRGVSSIRSNWLNAVAPHY 713
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 104 bits (249), Expect = 2e-23
Identities = 62/208 (29%), Positives = 109/208 (52%), Gaps = 3/208 (1%)
Frame = -3
Query: 746 FPLDPQXAKMXIASCNHNXSXGDXFHHCHAVSAAVLX*DXNEARKAADEXXMRFAHIDGD 567
FP+DP +K+ I + ++ + + +S + E + +D +F + D
Sbjct: 909 FPMDPSLSKLIIIAEDYKCTE-EIITIVSMLSVPSVFYRPKERAEESDAAREKFNVPESD 967
Query: 566 HLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEFTSK 387
HL LLN+Y +++N WC +F++ ++LK ++RQQL IM + ++ S E S
Sbjct: 968 HLMLLNIYQHWQRNGYSNSWCSKHFLHSKTLKRARDIRQQLVEIMSK---QKISLESVS- 1023
Query: 386 DYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTC---LDHKPDWVIYNEFV 216
D+ I +R+ L + +F Q A + G Y+ ++ LH ++ L + PD+VIY+E V
Sbjct: 1024 DWDI-VRRVLCSAYFHQAACAKGIGEYVHLRSGMPCHLHVTSSLYGLGYLPDYVIYHELV 1082
Query: 215 LTTKNYIRTVTDIKPEWLLKIAPQYYEL 132
LT+K Y+ VT + P WL + YY +
Sbjct: 1083 LTSKEYMNIVTSVDPYWLAEFGGVYYSV 1110
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 91.1 bits (216), Expect = 2e-19
Identities = 47/141 (33%), Positives = 81/141 (57%), Gaps = 1/141 (0%)
Frame = -3
Query: 575 DGDHLTLLNVYHAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFNLKRTSTEF 396
+GD +T LNV+ +F N +D WC N++NY++L+ ++R L R +++F++ T+
Sbjct: 503 EGDIITALNVFESFVGNKKDLQWCRKNYLNYQTLRQALDIRTHLVRFLNKFSIP-TAQRL 561
Query: 395 TSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQLHPSTCLDHKPDWVIYNEFV 216
S D I K L++GF VAHL+ GSY T+ QV S + K W++Y+ V
Sbjct: 562 PSSD-CSKILKCLLDGFVRNVAHLQNDGSYKTIGGKQVWLDSSSVLHEKKTPWIMYSSAV 620
Query: 215 LT-TKNYIRTVTDIKPEWLLK 156
+ T+ +++ ++ I+ WL K
Sbjct: 621 ESETQIFVKNISKIESFWLDK 641
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 669 SLPCCQCRSAXVRPKRSAEGCRRGXNAF 586
S+ CC CR P+R + RR AF
Sbjct: 164 SVSCCDCRYGICSPERFIQVLRRDNEAF 191
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 5.2
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 395 TSKDYYINIRKALVNGFFMQVAHLERTGSYLTVKDNQVVQL 273
T D Y+ + AL+N Q+ + + LT+ +V+QL
Sbjct: 832 TQTDEYLRRKDALINNLQNQLESTKEVANELTITKERVLQL 872
Score = 26.2 bits (55), Expect = 5.2
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = -3
Query: 542 HAFKQNMEDPHWCYDNFINYRSLKSGDNVRQQLSRIMDRFN 420
HA ++ E +F YRSL G V++ SR+ R N
Sbjct: 2057 HALQEERERVKSLETDFDKYRSLLEGQRVKRSESRLSMRSN 2097
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 6.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 501 IAPVGILHVLFEGVVYVQQREMV 569
I P GI H+L EG+ Y Q+ +++
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVL 221
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.4 bits (53), Expect = 9.2
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 577 STVTISRC*TYTTPSNRTWRIPTGAMITSSITDR*SQATTSGSNLAELW 431
STV S + P + + P SS T S +TTSGS+ + W
Sbjct: 218 STVIPSSIISAAPPDSASESTPASTSYASSTTSATSTSTTSGSSGSSDW 266
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -3
Query: 470 SGDNVRQQLSRIMDRFNLKRTSTEFT-SKDYYINIRKALVNGFFMQVAHLERTGSYL 303
S ++ LS ++ L ST D I + + N + +++AH +RT S+L
Sbjct: 29 SSKTCQETLSSLLRELQLSHFSTAVRPGSDTSIFVFVKVQNDYLIELAHNDRTSSFL 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,545,434
Number of Sequences: 5004
Number of extensions: 48424
Number of successful extensions: 148
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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