Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_N08
(759 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 213 3e-56
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 209 4e-55
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 78 1e-15
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 49 6e-07
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 34 0.025
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.10
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl... 32 0.10
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 31 0.13
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 31 0.18
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 30 0.31
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 30 0.31
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 29 0.54
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 3.8
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 3.8
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 26 5.1
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 213 bits (519), Expect = 3e-56
Identities = 93/114 (81%), Positives = 105/114 (92%)
Frame = -2
Query: 476 PKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAI 297
P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG +AKV RAVCMLSNTT+I
Sbjct: 329 PRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGSGIAKVNRAVCMLSNTTSI 388
Query: 296 AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 135
AEAW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 389 AEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 442
Score = 36.3 bits (80), Expect = 0.005
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = -1
Query: 531 PXHGQYMACCMLYRGDVVPQ 472
P G+YMA C+LYRGDV+P+
Sbjct: 311 PRTGRYMATCLLYRGDVIPR 330
Score = 31.9 bits (69), Expect = 0.10
Identities = 13/18 (72%), Positives = 13/18 (72%)
Frame = -3
Query: 583 EXTNAXXEPANQMVKCDP 530
E TN EP NQMVKCDP
Sbjct: 294 EITNQCFEPYNQMVKCDP 311
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 209 bits (510), Expect = 4e-55
Identities = 103/172 (59%), Positives = 122/172 (70%), Gaps = 2/172 (1%)
Frame = -2
Query: 644 VXXXPXIFAXKAYXEQXXXXXXHKRMXXARQPDGEM-RSPVMASTWLAVCCTVVTSY-PK 471
V P + A KA+ E + +P +M + A ++A C P+
Sbjct: 270 VTYAPIVSAAKAFHESNSVQEITNQCF---EPYNQMVKCDPRAGRYMATCLLYRGDVIPR 326
Query: 470 DVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE 291
DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G ++AKV RAVCMLSNTT+IAE
Sbjct: 327 DVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGSEIAKVDRAVCMLSNTTSIAE 386
Query: 290 AWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMD 135
AW+RLDHKFDLMY+KRAFVHWYVGEGMEEGEFSEAREDLAALE+DYEEVG D
Sbjct: 387 AWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEEVGQD 438
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 78.2 bits (184), Expect = 1e-15
Identities = 41/116 (35%), Positives = 66/116 (56%), Gaps = 3/116 (2%)
Frame = -2
Query: 473 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 294
K+V+ I +++TK + FV+W P + PP DL + + + N+T+I
Sbjct: 324 KEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL---KMSATFIGNSTSIQ 375
Query: 293 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGMD 135
E + RL +F M+ ++AF+HWY GEGM+E EF+EA DL + + Y+E G+D
Sbjct: 376 EIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEAGID 431
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -1
Query: 537 AIPXHGQYMACCMLYRGDVVPQGCERGHRYHQ--NQAYY 427
A P HG+Y+ L+RG V + + R Q N AY+
Sbjct: 303 ADPRHGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYF 341
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 49.2 bits (112), Expect = 6e-07
Identities = 30/112 (26%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Frame = -2
Query: 476 PKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAI 297
P DV+ ++ I+ +R F+ W P +V ++ + P + ++ + ML+N T+I
Sbjct: 330 PADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYIKTNHRVSGL-----MLANHTSI 384
Query: 296 AEAWARLDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYE 150
A + R ++D + + AF+ Y E + E EF +R+ +A L +YE
Sbjct: 385 ASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 33.9 bits (74), Expect = 0.025
Identities = 31/118 (26%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Frame = -3
Query: 445 SKPSVLSN-SSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTT 269
SKP V+ N V P +R + P+ ++P P+ CP+ PP L A+
Sbjct: 181 SKPPVIPNLPKLQVHP-NRLPHPIHNHPYSSPTSYPPPLCPATYCPSNPPQLAPATAIAP 239
Query: 268 SSTSCTPSVLSCTGTSVRVWRRESSP--KPVRTWLPSKRITKKSAWTPLKARVREPKS 101
SS S ++ + T + + P + WLP + T + P A V +P S
Sbjct: 240 SSQSSQHKSVNYSVTPSSINNHTAVPLSPTLAVWLPMTQPT----FQPPSANVYQPAS 293
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.10
Identities = 37/129 (28%), Positives = 52/129 (40%), Gaps = 7/129 (5%)
Frame = -3
Query: 454 SLPSKPSVLSNSSTGVQPV---SRSVST-TSHPPWCPEATWPRFNVP---SACCPTPPPS 296
S P P+ S++ T P+ S S +T TS PP T VP ++ TPPP
Sbjct: 314 STPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPP 373
Query: 295 LKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPSKRITKKSAWTPLKARV 116
T+SS + S SCT TS + +S PV +P + T
Sbjct: 374 ASTSSTGTSSSPLLSTST-SCT-TSTSIPPTGNSTTPVTPTVPPTSSSTPLTTTNCTTST 431
Query: 115 REPKSTKPV 89
P ++ PV
Sbjct: 432 SVPYTSTPV 440
Score = 28.7 bits (61), Expect = 0.95
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = -3
Query: 436 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKL----GLALTT 269
S +ST + P S S ++ P P T P + S P PP S L T
Sbjct: 169 STSCTTSTSIPPTGGSSSLST--PITP--TVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Query: 268 SSTSCTPSVLSCTGTS 221
+STSCT S TG S
Sbjct: 225 TSTSCTTSTSIPTGGS 240
>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 709
Score = 31.9 bits (69), Expect = 0.10
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = -3
Query: 328 PSACCPTPPPSLKLGLALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPVRTWLPS--KRI 155
P+ + P + G+ TS TS T S S++ S+P P W P+
Sbjct: 134 PATSSFSDPKAFSAGVPKFTSDTSSTVSSTPSLNHSLQNSMPPSTPTPPPVWAPTIVSSA 193
Query: 154 TKKSAWTPLKARVREPKSTK 95
S+ TP+ V EP+ TK
Sbjct: 194 LGTSSKTPVYVVVDEPRFTK 213
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 31.5 bits (68), Expect = 0.13
Identities = 22/85 (25%), Positives = 35/85 (41%)
Frame = -3
Query: 445 SKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTS 266
S P+ S + PVS + T + PP A R N A P + + A T S
Sbjct: 1001 SMPAAKSKPAPMANPVSTAQQTQNRPP--APAMQARPNTTQAAAPVTSTTTTIKQATTVS 1058
Query: 265 STSCTPSVLSCTGTSVRVWRRESSP 191
++ PS ++ +S + S+P
Sbjct: 1059 ASKPAPSTVTSAASSPSNISKPSAP 1083
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 31.1 bits (67), Expect = 0.18
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Frame = -3
Query: 436 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTS 257
S+L +S+ P+S + STT+ T ++ TP S+ + T +STS
Sbjct: 280 SLLPSSTPSSTPLSSANSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSANSTTATSTS 339
Query: 256 CTP--SVLSCTGTS 221
TP SV S T TS
Sbjct: 340 STPLSSVNSTTATS 353
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.3 bits (65), Expect = 0.31
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 436 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 260
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 259 SCTPSVLS 236
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 30.3 bits (65), Expect = 0.31
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = -3
Query: 436 SVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGL-ALTTSST 260
S+L ST V + T P AT R+N + P P P G+ A+ T++T
Sbjct: 1581 SLLGEEST-VSTMYGVKPTLPETPKPAIATHSRYNASFSSSPPPQPGNSSGMSAMNTNTT 1639
Query: 259 SCTPSVLS 236
S TP LS
Sbjct: 1640 STTPVSLS 1647
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 29.5 bits (63), Expect = 0.54
Identities = 17/55 (30%), Positives = 25/55 (45%)
Frame = -3
Query: 448 PSKPSVLSNSSTGVQPVSRSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLG 284
P+ P + S P + S TS PP + P + P + P+ PPSL +G
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP-SAPPSLPPSAPPSLPMG 442
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Frame = -3
Query: 454 SLPSKPSVLSNSSTGVQPVSRSVSTT-SHPPWCPEATWPRFNVPSACCPTPPPSLKLGLA 278
S P+ P + + S T PV S S PP P + P + + P PPS +
Sbjct: 399 SAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Query: 277 LTTSSTSCTP 248
L + P
Sbjct: 459 LPAGMPAAPP 468
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 385 STTSHPPWCPE--ATWPRFNVPSACCPTPPP 299
++TS PP P ++ P VPS P PPP
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPP 255
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Frame = -3
Query: 445 SKPSVLSNSSTGVQP--VSRSVSTTSHPPWC--PEATWPRFNVPSACCPTPPP 299
S P+ S++GV VS S S PP P A P ++PS P PPP
Sbjct: 141 SAPASQEPSASGVNAPTVSAPNSMVSPPPSFQPPSAAAPATSLPSDYNPPPPP 193
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 394 RSVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLGLALTTSSTSCTPSVLS 236
++ S T+ P P ++ FN PSA P P++ + +T TPS S
Sbjct: 453 KAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTT--TPSATS 503
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 26.2 bits (55), Expect = 5.1
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
Frame = -3
Query: 454 SLPSKPSV---LSNSSTGVQPVSRSVSTTSHP 368
+LP KPS+ +++S V+P S STTS+P
Sbjct: 5 TLPPKPSISPSIASSFPTVKPFSSQNSTTSNP 36
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 8.9
Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 5/94 (5%)
Frame = -3
Query: 448 PSKPSVLSNSSTGVQPVSR-----SVSTTSHPPWCPEATWPRFNVPSACCPTPPPSLKLG 284
PS P S++ P++R +S+ + P P A P VPS P P P+
Sbjct: 992 PSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPP 1051
Query: 283 LALTTSSTSCTPSVLSCTGTSVRVWRRESSPKPV 182
+ ++S P + + + S PV
Sbjct: 1052 VPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPV 1085
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,592,218
Number of Sequences: 5004
Number of extensions: 53772
Number of successful extensions: 219
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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