Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_N01
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 30 0.43
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.57
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 29 0.99
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c... 28 1.7
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 4.0
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 5.3
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 25 9.3
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 9.3
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 29.9 bits (64), Expect = 0.43
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 554 RHERTGRLILQXHDDFRCVNFSSPRETCLLSXFACLLXPEXIE 682
RH + G L ++ H DF NF++P + LL L P IE
Sbjct: 314 RHHQPGNLYIRFHVDFPEPNFATPEQLALLEK---ALPPRKIE 353
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 29.5 bits (63), Expect = 0.57
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +3
Query: 390 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASP-DTNA 566
P T+ T + PP+ P ++ TST T T + P T+++ +T+
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702
Query: 567 P 569
P
Sbjct: 1703 P 1703
Score = 27.9 bits (59), Expect = 1.7
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Frame = +3
Query: 375 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRQ 527
P L ++ TTI P + + KPT ANT TST T T +
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380
Query: 528 RNPNTAASPDTNAPDVLSYRXTTTS 602
P T++S ++ + S TS
Sbjct: 381 STPITSSSVLNSSTPITSSSILNTS 405
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 28.7 bits (61), Expect = 0.99
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 512 NLHPPAEPEHRRIARHERTGRL 577
NL PAE +HRR+ R +R G L
Sbjct: 235 NLDSPAELKHRRLVRSQRNGPL 256
>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 248
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 320 PSATCADSQDILPPCKLLTATNLTSHHANYNFTGST 427
PSA+ + S + PP ++L+ ++TS HA N T
Sbjct: 213 PSASASISDSLPPPYQVLSVPSVTSTHAFSNNANQT 248
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.6 bits (56), Expect = 4.0
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +2
Query: 374 TATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIA 553
T T S ++ + S S + H + +E S H+H HR++ EP ++
Sbjct: 110 TNTEKDSRSIAHSTSRSRSTSPANRHRRK-EKERTRSNHRHGSHRRH-----EPYRTHLS 163
Query: 554 RHER 565
RH R
Sbjct: 164 RHHR 167
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 26.2 bits (55), Expect = 5.3
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +1
Query: 358 TMQTSYRNKSYQPPRKLQFYGFHLSYTMLLPH*GSQPRTLVKHAQART 501
TM + ++K RKL+ HL + L+ H QP +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 345 KTFYHHANFLPQQIL 389
+TF HHAN P++IL
Sbjct: 13 RTFAHHANLTPRKIL 27
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +3
Query: 447 PTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNA 566
P L +PT+ Q R GK + NP + SP + A
Sbjct: 219 PLLNRPTSFNRQTRIRRAPPGKLDLSNSNPTSPVSPSSMA 258
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 9.3
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +3
Query: 360 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 476
H N + P T T VPP H T T+ PT ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,741,310
Number of Sequences: 5004
Number of extensions: 53112
Number of successful extensions: 190
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -