Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_N01
(784 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 32 0.59
05_05_0227 - 23449579-23450459,23450574-23450691 31 1.4
01_06_0140 - 26881282-26881290,26882027-26882128,26882816-268829... 30 2.4
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 29 3.2
11_05_0086 + 18964493-18965737,18965896-18966360 29 4.2
02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142 29 4.2
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302... 29 4.2
08_02_0707 - 20212190-20214592 29 5.5
03_01_0404 + 3138624-3140096 29 5.5
12_02_0982 - 25031778-25032122,25032388-25032534,25032693-250337... 28 7.3
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519... 28 7.3
09_06_0239 - 21794691-21795986 28 9.6
03_04_0023 + 16537257-16537272,16537515-16537929,16538404-165384... 28 9.6
01_05_0230 + 19543410-19543722,19544165-19544238 28 9.6
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 31.9 bits (69), Expect = 0.59
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 452 TEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHERTGR 574
+ E EH SS +H HR + H + EHR RH+R R
Sbjct: 778 SSEDEHEHRSSKSRHR-HRDDYHYHEDDEHRSSHRHQRDHR 817
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = +2
Query: 392 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRR 547
S NY+ S +R H E +R H S HKH L R + EP H R
Sbjct: 725 SDEENYDSEESYKHSR-KKHRSEDSRAHTSDVHKHKLKRHS--KDLEPRHHR 773
>05_05_0227 - 23449579-23450459,23450574-23450691
Length = 332
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 270 RLDGXGGRPTGPPNDEITPPARTADIGAP 184
R DG GGRP+ P E T P R GAP
Sbjct: 231 RGDGGGGRPSAPARREGTDPCRPVLGGAP 259
>01_06_0140 -
26881282-26881290,26882027-26882128,26882816-26882924,
26883712-26883860,26883941-26884043,26884635-26884810,
26885004-26885066,26885258-26885346,26885428-26885538,
26885610-26885744,26886415-26886580,26886788-26886856,
26886943-26887230,26888612-26888866
Length = 607
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 579 IRRPVRSCLAMRRCSGSAGGCRFFR*SACLCVLDKCSRLASSV 451
+R R A R C GSAG R R SA V+ + RL + V
Sbjct: 31 LRPAARLSFAPRWCGGSAGAARARRESAVTSVISRAPRLDAEV 73
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/28 (57%), Positives = 17/28 (60%)
Frame = +1
Query: 124 PATAQSPTRRRTLAQVQPERGGSNIGSP 207
PA A SPTRRR L + P SN GSP
Sbjct: 31 PAAAPSPTRRRRL--LAPLAAASNSGSP 56
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 29.1 bits (62), Expect = 4.2
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -2
Query: 240 GPPNDEITPPARTADIGAPALRLHLR*GAPPRRRL 136
GPP D PP T + A L H R PP R L
Sbjct: 82 GPPPDPNQPPPFTNVVSAALLARHRRAAVPPLRAL 116
>02_03_0287 + 17320242-17320481,17323422-17324767,17325124-17325142
Length = 534
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 342 HKTFYHHANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPTAN 473
H+ F +FLP +I L+VPP LH V P P A+
Sbjct: 75 HRWFAQGFHFLPARIPMDGPSGWFLKVPPPLHTVDPPGSPPPAS 118
>01_07_0213 -
42028941-42029055,42029444-42029480,42029876-42030244,
42030332-42031201,42051574-42052891
Length = 902
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 290 TGWAATAEVSPSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANR 469
TG A+++ + SA A + +LLT+ TSH + N T S SH + + R
Sbjct: 680 TGSASSSPATASAAAASKKP-----RLLTSQTTTSHTSTSNATTPRSFDTTSSHQDASFR 734
Query: 470 EHL 478
E L
Sbjct: 735 ESL 737
>08_02_0707 - 20212190-20214592
Length = 800
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 392 SHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARH 559
SHH +++ S + S TE + +E+ S H H H + H +E H++ H
Sbjct: 549 SHHHDHHHDSSNEESHHNSLTENSCKENHSHCHGHDHHHHHHHDHSE-HHQQSGDH 603
>03_01_0404 + 3138624-3140096
Length = 490
Score = 28.7 bits (61), Expect = 5.5
Identities = 20/74 (27%), Positives = 26/74 (35%)
Frame = +2
Query: 320 PSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTEEANREHLSSTHKHA 499
PSA A + LP LLT L H + + SL R S + L +
Sbjct: 24 PSAAAAPTAPALPVQALLTTAGLLPRHPDLSLVALNSLLRVLSRRASSPAHPLLALRLLL 83
Query: 500 LHRKNLHPPAEPEH 541
L P P+H
Sbjct: 84 LMLSPASPLPPPDH 97
>12_02_0982 -
25031778-25032122,25032388-25032534,25032693-25033718,
25033758-25034227,25034393-25034471
Length = 688
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/54 (27%), Positives = 21/54 (38%)
Frame = -2
Query: 327 AEGETSAVAAHPVRENRADRLDGXGGRPTGPPNDEITPPARTADIGAPALRLHL 166
A+G V HP RE+ D D G P ++ A D P + + L
Sbjct: 228 ADGHDLGVVVHPWREDDDDDSDDHDGGPDDAEDEAAVQDAGVVDDSGPGVAVEL 281
>09_03_0058 +
11950668-11950701,11951068-11951106,11951586-11951982,
11952016-11952314,11953743-11956795
Length = 1273
Score = 28.3 bits (60), Expect = 7.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 18 LRLHSDLEWNIKGKPKPLIYNTLKLWNTHVDVSGWTCHSTV 140
LRLH D +W ++ K + ++ TL +T + + W H V
Sbjct: 295 LRLHRDKQWAVQDK-RQVLQRTLTEMHTFIKHAEWWFHKDV 334
>09_06_0239 - 21794691-21795986
Length = 431
Score = 27.9 bits (59), Expect = 9.6
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = +2
Query: 311 EVSPSATC-ADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTRCYSHTE 457
+ P +C A + D+ P K T NLTS NY ++ S T Y TE
Sbjct: 115 QCQPCLSCVAQAGDMYDPNKTETYANLTSSSYNYTYS-KQSFTSGYFATE 163
>03_04_0023 +
16537257-16537272,16537515-16537929,16538404-16538466,
16538604-16538607
Length = 165
Score = 27.9 bits (59), Expect = 9.6
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = +2
Query: 422 STSLTRCYSHTEEANREHLSSTHKHALHRKNLHPPAEPEHRRIARHE 562
+TSL R H + + H HA H + PP H ++ RHE
Sbjct: 5 ATSLNRSIDHKQGGQQRGTPQQHLHAGHAQE-QPPGH-GHGQVQRHE 49
>01_05_0230 + 19543410-19543722,19544165-19544238
Length = 128
Score = 27.9 bits (59), Expect = 9.6
Identities = 24/64 (37%), Positives = 27/64 (42%)
Frame = -2
Query: 402 AWWLVRFVAVRSLHGGKMSCESAQVAEGETSAVAAHPVRENRADRLDGXGGRPTGPPNDE 223
A WL F+ R L AEGE AAHP+R R R RP+ PP
Sbjct: 16 ASWLPLFL--RRLSSSSRPTAEESRAEGEEREGAAHPLR-LRCRR------RPSPPPAPP 66
Query: 222 ITPP 211
TPP
Sbjct: 67 STPP 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,142,706
Number of Sequences: 37544
Number of extensions: 450782
Number of successful extensions: 1551
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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