Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_N01
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    31   1.2  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical pr...    30   2.1  
D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.        30   2.1  
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    29   2.8  
U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    24   2.8  
Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U55374-4|AAB36866.2|  589|Caenorhabditis elegans Immunoglobulin-...    28   6.6  
U55374-3|ABS19462.1|  591|Caenorhabditis elegans Immunoglobulin-...    28   6.6  
U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    28   8.7  

>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/70 (25%), Positives = 25/70 (35%)
 Frame = +3

Query: 387 LPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNA 566
           LP TT+ T+    P   + +   +KPT       T    T K       P T   P T  
Sbjct: 591 LPFTTEQTVTTEEPTTAEKSTATQKPTTTQESVSTEKTSTTKKASTTEEPTTTDEPTTTT 650

Query: 567 PDVLSYRXTT 596
               + + TT
Sbjct: 651 ESSTTGKATT 660


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 2/74 (2%)
 Frame = +3

Query: 396 TTQTTILRVPPLLHDVTPTLRK--PTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAP 569
           TT  T     P     TPT     PT  T    T+T  T         P T  +P T   
Sbjct: 193 TTAPTTTTTTPTTTTTTPTTTTTVPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTS 252

Query: 570 DVLSYRXTTTSDVS 611
           +  +   TTT+  +
Sbjct: 253 ETTTTTPTTTTQTT 266



 Score = 29.1 bits (62), Expect = 3.7
 Identities = 21/69 (30%), Positives = 25/69 (36%)
 Frame = +3

Query: 396 TTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDV 575
           TT T     P      TPT   PT  T    T+T  T  T      P T  +  T  P  
Sbjct: 103 TTTTETTTTPTTETTTTPTTTTPTTTTTTPTTTTTETTTT------PTTTTTETTTTPTT 156

Query: 576 LSYRXTTTS 602
            +   TTT+
Sbjct: 157 TTTTPTTTT 165



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/78 (28%), Positives = 26/78 (33%)
 Frame = +3

Query: 390 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAP 569
           P TT TT           T T   PT  T    T+T  T  T      P T  +  T  P
Sbjct: 88  PTTTTTTPTTTTTTPTTTTETTTTPTTETTTTPTTTTPTTTT----TTPTTTTTETTTTP 143

Query: 570 DVLSYRXTTTSDVSIFLP 623
              +   TTT   +   P
Sbjct: 144 TTTTTETTTTPTTTTTTP 161



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
 Frame = +3

Query: 387 LPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTS--THFTGKTCIRQ--RNPNTAASP 554
           +P TT TT           T T   PT  T  A T+  T  T  T   Q    P T  + 
Sbjct: 216 VPTTTTTTPTTTTTTTTTPTTTTTTPTTTTTPATTTSETTTTTPTTTTQTTTKPTTTTTT 275

Query: 555 DTNAPDVLSYRXTTTS 602
            T  P   +   TTT+
Sbjct: 276 PTTTPTTTTTPTTTTT 291


>Z69792-1|CAB61002.1|  605|Caenorhabditis elegans Hypothetical
           protein F40E10.1 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +3

Query: 390 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 551
           P TT TT    P  +  V+PT       T  ARTST     T   Q  P T  S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527


>D85744-1|BAA12861.1|  605|Caenorhabditis elegans HCH-1 protein.
          Length = 605

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 20/54 (37%), Positives = 22/54 (40%)
 Frame = +3

Query: 390 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAAS 551
           P TT TT    P  +  V+PT       T  ARTST     T   Q  P T  S
Sbjct: 478 PTTTSTTTTTAPITVPTVSPTTTTTRQTTTTARTST----TTTTTQAPPTTTTS 527


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -3

Query: 200 PILEPPRSGCTCARVRRLVGDCAVAGPTRDVNVCVPELQC 81
           P  +P  + C+C     +   C+ A P +     VP  QC
Sbjct: 45  PYTQPQETSCSCQNTAPVQTSCSCAQPVQQQTYLVPTSQC 84


>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 24.2 bits (50), Expect(2) = 2.8
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 465 TANTCQARTSTHFTGKTCIRQRNPNTAASPDT 560
           T   C    +T  T  TC+   NP T  S  T
Sbjct: 83  TCGYCTGTATTTRTSTTCVDLTNPTTGVSDCT 114



 Score = 23.8 bits (49), Expect(2) = 2.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 315 SHLRLPVQTHKTFYHHANFLPQQILPATTQTTI 413
           S L + V   +TF      L QQ+L  TT+T++
Sbjct: 10  SLLEVVVALMETFSQSPQHLQQQLLSTTTRTSV 42


>Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical
           protein R166.1 protein.
          Length = 502

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 308 AEVSPSATCADSQDILPPCKLLTATNLTSHHANYNFTGSTSLTR 439
           A + P+ T   S  + PP    TA   + +    NF+G+ S+TR
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTR 248


>Z84574-6|CAE17784.1|  174|Caenorhabditis elegans Hypothetical
           protein F33E2.7 protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/81 (27%), Positives = 31/81 (38%)
 Frame = +3

Query: 375 PQQILPATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASP 554
           P +  P+TT TT     P     TPT    T  T     +T  T  T        T  + 
Sbjct: 80  PSKPKPSTTTTT--TTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTPTTTTTTR 137

Query: 555 DTNAPDVLSYRXTTTSDVSIF 617
            T   +V  +R +TT++   F
Sbjct: 138 STPLTEV--FRTSTTTEAPFF 156


>U55374-4|AAB36866.2|  589|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform a protein.
          Length = 589

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 217 RDLVVWRTRRPASXTVEAICP 279
           R +V WR R+P    V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313


>U55374-3|ABS19462.1|  591|Caenorhabditis elegans
           Immunoglobulin-like cell adhesionmolecule family protein
           3, isoform b protein.
          Length = 591

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 217 RDLVVWRTRRPASXTVEAICP 279
           R +V WR R+P    V+A CP
Sbjct: 293 RPIVYWRMRKPNGDVVDAACP 313


>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +3

Query: 420 VPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYRXTTT 599
           VPP     + T +KP+  T    T+   T  T      P T+ S  T+     +   T T
Sbjct: 583 VPPTTSTSSTTTQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTAT 642

Query: 600 S 602
           +
Sbjct: 643 T 643



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/69 (24%), Positives = 27/69 (39%)
 Frame = +3

Query: 390 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAP 569
           P+TT T     P      T T  KPT +T  + ++T  T  +      P    +  +  P
Sbjct: 597 PSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTSEKP 656

Query: 570 DVLSYRXTT 596
             L+ +  T
Sbjct: 657 VTLTTQTWT 665


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/61 (26%), Positives = 24/61 (39%)
 Frame = +3

Query: 420 VPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAPDVLSYRXTTT 599
           VPP     + T +KP+  T    T+   T  T      P T+ S  T+     +   T T
Sbjct: 583 VPPTTSTSSTTTQKPSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTAT 642

Query: 600 S 602
           +
Sbjct: 643 T 643



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 17/69 (24%), Positives = 27/69 (39%)
 Frame = +3

Query: 390 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAP 569
           P+TT T     P      T T  KPT +T  + ++T  T  +      P    +  +  P
Sbjct: 597 PSTTTTVPSTTPTSTTTTTTTTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTSEKP 656

Query: 570 DVLSYRXTT 596
             L+ +  T
Sbjct: 657 VTLTTQTWT 665


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/70 (30%), Positives = 26/70 (37%)
 Frame = +3

Query: 390 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRNPNTAASPDTNAP 569
           P TT T+     P     T T    T  T    TST  T  T        T  +  T + 
Sbjct: 266 PETTTTSTTTTEPTTTTSTTT---QTTTTVPTSTSTISTTSTTTTTPTTTTTTTSTTTSD 322

Query: 570 DVLSYRXTTT 599
           D+L  + TTT
Sbjct: 323 DLLWVKITTT 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,019,469
Number of Sequences: 27780
Number of extensions: 346205
Number of successful extensions: 1187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)