Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_M24
         (792 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    29   0.76 
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    28   1.3  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    27   2.3  
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr...    27   3.1  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    26   7.1  
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   7.1  
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    25   9.4  
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1...    25   9.4  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 411 PQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVF 509
           P + RLQ +R  G+   PNG P Y  ++K +VF
Sbjct: 556 PNSSRLQKLRAPGLC--PNGSPNYRNRYKLIVF 586


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 336 YHLEQFLRALPMEHTV*NTEGTEVPPQTQRLQTI 437
           Y LEQ L+  P+EH +  TE  + PP+  R++T+
Sbjct: 86  YGLEQQLKTNPLEHPILITEPFDNPPE-NRVKTL 118


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/50 (26%), Positives = 21/50 (42%)
 Frame = +2

Query: 440 REWDYRQSERPSSVWSQMEEAGIWEPRRRDESSTPCEAGLVFIIRSITLE 589
           R W + +SE PS + S   +   W     D   T C+   +F  + I  +
Sbjct: 322 RSWFFNRSEIPSDITSGSPQPAKWSEPVADFPDTKCDIDKMFSKQKILFD 371


>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 329 MLVSSRTIPQSTPHGTYGIKYRGNRSPSANPEAPND 436
           +L  S  I    P+   GIK +G  SP    E PN+
Sbjct: 338 ILPQSMPIASVPPYSLQGIKRQGTHSPMVEGENPNN 373


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 209 IAGWYVAKKISGNA-LWMTAVAPGSMDELYSGGGRCDG 319
           I  +Y A  + G+  + M  +  GSMD+LY+GG + +G
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEG 415


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 449  DYRQSERPSSVWSQMEEAGIWEPRRRDESSTPCEAGLV 562
            +Y  S+  S +W       I+E RR   S+   E+G+V
Sbjct: 967  EYLFSQESSQLWDDSPYRSIFEDRRCSTSAVILESGIV 1004


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 238 LWKRTVDDRSGSR*YG*TLLRWRAVRW 318
           +WK  V+DRSG +  G T   W+   W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 283

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 24/74 (32%), Positives = 33/74 (44%)
 Frame = +1

Query: 334 GIISNNSSEHSPWNIRYKIQREPKSLRKPRGSKRSERMGLSTIRTALLCMESNGRSWYLG 513
           GI    S+ H        +QR+ K  RKP  S   +R    T +   L  + N R   L 
Sbjct: 178 GITLERSTMHGVETCGGSLQRKKKIRRKPTPSSTKKRKLTRTGQK--LGTDMNIRLELLK 235

Query: 514 APAQR*EQYSMRGR 555
           +PA+  +  SMRGR
Sbjct: 236 SPAKP-QAQSMRGR 248


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,085
Number of Sequences: 5004
Number of extensions: 73677
Number of successful extensions: 210
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)