Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_M24
(792 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 32 0.60
04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241... 31 1.0
05_02_0078 - 6386278-6386291,6386462-6386594,6386721-6388613,639... 30 2.4
01_06_1238 + 35646647-35646932,35647333-35647950,35648732-356490... 30 2.4
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 29 5.6
03_06_0600 + 34988743-34989407,34990033-34990051 29 5.6
10_01_0144 - 1705429-1706250 28 7.4
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 28 9.8
04_01_0007 + 168423-168485,168590-168697,169662-169741,170497-17... 28 9.8
02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753 28 9.8
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 31.9 bits (69), Expect = 0.60
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = +2
Query: 383 IKYRGNRSPSANPEAPNDPREWDYRQSERPSSVWSQMEEAGIWEPRRRDESSTPCE 550
++ RG++SPS PE P D R SE S+V + E+ + P S P E
Sbjct: 309 VQARGDKSPSIKPEGAKQP---DQRSSEAASTV-TPFEQLALPAPASSSSSKPPVE 360
>04_04_0397 -
24921892-24922947,24923486-24923734,24923807-24924157,
24924244-24924331,24924466-24924563,24925141-24925362,
24925490-24925585,24926410-24926481,24927156-24927305
Length = 793
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 317 GKNEMLVSSRTIPQSTPHGTYG-IKYRGNRSPSANPEAPNDPREWD 451
G+ E V +T Q+ PH YG R R+ + P A N+ + WD
Sbjct: 101 GRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWD 146
>05_02_0078 -
6386278-6386291,6386462-6386594,6386721-6388613,
6391153-6391239,6391691-6391765,6393982-6394327,
6394428-6394450
Length = 856
Score = 29.9 bits (64), Expect = 2.4
Identities = 28/107 (26%), Positives = 48/107 (44%), Gaps = 15/107 (14%)
Frame = +2
Query: 302 GGRCDGKNEMLVSSRT--IPQSTPHGTYGIKYRGNRSPSANPEAPN----DPREWDYRQ- 460
GG+ + +++ S T +P PH YR N + NP N P ++R+
Sbjct: 651 GGKYNTRSDQNSLSATTFLPTFIPHAKQSAVYRANSTWKHNPYPANLLVHPPDGTNFRKD 710
Query: 461 --------SERPSSVWSQMEEAGIWEPRRRDESSTPCEAGLVFIIRS 577
+E PSSV + M +W+ R+ D ++ +G+ +I RS
Sbjct: 711 QNQIIRGVAEIPSSV-NTMSRDTVWKTRKIDVDNSNISSGVRYISRS 756
>01_06_1238 +
35646647-35646932,35647333-35647950,35648732-35649032,
35649137-35649416,35649715-35649822,35650088-35650366,
35650805-35650963
Length = 676
Score = 29.9 bits (64), Expect = 2.4
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Frame = +2
Query: 296 SGGGRCDGKNEMLVSSRTIPQSTPHGTYGIKYRGNRSPSANPEAPNDPREWDYRQS--ER 469
S G ++ + + P P T G G +P+A P +P + +
Sbjct: 35 SAAGDAGSDSDAALDPQLPPLRLPASTSG----GGGAPAAPPASPGSSSDSASSSAFVSM 90
Query: 470 PSSVWSQMEEAGIWEPRRRDESSTPCEAG 556
SS + G+W PR D SS+ E G
Sbjct: 91 RSSPSGMLNPYGVWSPRHSDTSSSEMEFG 119
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -3
Query: 253 QCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPSSXR 149
QCV++D + SPPRC PS+ +CP R
Sbjct: 107 QCVAKDAAAQPEMSWPRGSPPRC-PSS-SCPEPQR 139
>03_06_0600 + 34988743-34989407,34990033-34990051
Length = 227
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/46 (32%), Positives = 18/46 (39%)
Frame = -3
Query: 706 LH*QGXVFMEDXSCPPYPPRXGDRSXPIEXQAYRDNFLAFQGDGAN 569
LH G SCPP PP I + R +F GDG +
Sbjct: 138 LHPPGSAASPSVSCPPPPPPPPPGPRRISCRKCRGSFFTVVGDGVS 183
>10_01_0144 - 1705429-1706250
Length = 273
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +3
Query: 282 WMNSTPVAGGAMVKTRCWYHLEQFLRALP 368
W+ +TP+A CWY L L +P
Sbjct: 241 WLRTTPLALAPPSSAPCWYFLTTLLEIIP 269
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 27.9 bits (59), Expect = 9.8
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 676 DXSCPPYPPRXGDRSXP 626
D S PP+PPR G R P
Sbjct: 144 DRSAPPFPPRAGHRRRP 160
>04_01_0007 +
168423-168485,168590-168697,169662-169741,170497-170548,
171112-171200,171756-171875,172204-172248,172352-172436
Length = 213
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 494 EEAGIWEPRRRDESSTPCEAGLVFIIRSITLESKEVIAI 610
+E +WEP R+ +S+ G+ FI T E KE+ +
Sbjct: 105 DEDVLWEPNVREANSSVAARGMKFIDWLWTREEKEIAIV 143
>02_03_0414 - 18792830-18793126,18793131-18793232,18793454-18793753
Length = 232
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Frame = +2
Query: 305 GRCDGKNEMLVSSRTIPQSTPHGTYGIKYRGNRSPSANP-EAPNDPREWDYRQSERPSSV 481
GRCDG+ + SR P+ + T G+ +P P AP PR + V
Sbjct: 50 GRCDGRRHRCLLSRGWPRRSSPSTVGLDAAQQSAPVHTPLHAP--PRRGQAARRYSTDPV 107
Query: 482 WSQMEEAGIWE 514
+ ++ WE
Sbjct: 108 LVRPDDHARWE 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,101,649
Number of Sequences: 37544
Number of extensions: 590238
Number of successful extensions: 1625
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1624
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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