Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_M24
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.81 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.81 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    25   1.1  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.9  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.9  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   4.3  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    23   4.3  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    23   4.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 12/35 (34%), Positives = 15/35 (42%)
 Frame = +3

Query: 396 GTEVPPQTQRLQTIRENGIIDNPNGPPLYGVKWKK 500
           G E+ P TQ +   R      N  G P+  V W K
Sbjct: 309 GAEIEPSTQTIDFGRPATFTCNVRGNPIKTVSWLK 343


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 428 PNDPREWDYRQSERPSSVWSQMEEAGIWEPRRRDESS 538
           P+D  E + ++S++PS V    +  G  E R+R   S
Sbjct: 349 PSDKEEREAQKSQKPSPVTGASKSHGDLELRQRSSKS 385


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +1

Query: 577 HHLGKQGSYRDRPVXRWXP 633
           HH G  GS +D P  R+ P
Sbjct: 64  HHYGAAGSQQDMPYPRFPP 82


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 215 GWYVAKKISGNALWMTAVAPGSMDELYSG-GGRCDGKNEM 331
           GW +  +I  N L    + PG+   L+ G G +  G NE+
Sbjct: 13  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 49


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 215 GWYVAKKISGNALWMTAVAPGSMDELYSG-GGRCDGKNEM 331
           GW +  +I  N L    + PG+   L+ G G +  G NE+
Sbjct: 18  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 54


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 215 GWYVAKKISGNALWMTAVAPGSMDELYSG-GGRCDGKNEM 331
           GW +  +I  N L    + PG+   L+ G G +  G NE+
Sbjct: 18  GWQIRDRIGDNELEERIIYPGT---LWCGHGNKSSGPNEL 54


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 491 FDSIQRRAVRIVDNPILSDRLEPLGL 414
           +DSI+ R   I D   +++   PLGL
Sbjct: 167 YDSIEARDSAIFDGDFITENNLPLGL 192


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 539 YCSHLCAGAPK 507
           +CSHLC  AP+
Sbjct: 42  HCSHLCLPAPR 52


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -2

Query: 539 YCSHLCAGAPK 507
           +CSHLC  AP+
Sbjct: 42  HCSHLCLPAPR 52


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +1

Query: 361 HSPWNIRYKIQREPKSL 411
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,959
Number of Sequences: 438
Number of extensions: 5970
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)