Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_M16
         (796 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798     33   0.20 
01_06_1202 + 35396165-35396260,35396398-35396549,35396694-353969...    28   7.4  
01_06_0475 + 29610268-29610711                                         28   7.4  
06_03_0913 + 25913231-25913609,25913702-25913775,25914400-259145...    28   9.8  
02_01_0624 - 4681834-4682298,4684250-4684398,4684479-4684557,468...    28   9.8  

>12_02_1072 + 25834719-25834908,25837822-25838099,25839265-25839798
          Length = 333

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -3

Query: 551 LTGHDDFRCVNFSSPRK-LACFLVCLL--AGARSHRTCSVIGTTSIKRHDTRTLSSWPPV 381
           + G  D +  +FSS    + C ++C     G  + ++ S+  TT+   HDT T +S PP+
Sbjct: 142 MEGVHDQQASSFSSKEDWVLCRVICKRKSGGGATSKSRSLTTTTTTIVHDTSTPTSSPPL 201

Query: 380 TTFPILRTEWKAVDVAQNTSS 318
              P++ T    +  + NTSS
Sbjct: 202 P--PLMDTTLAQLQASMNTSS 220


>01_06_1202 +
           35396165-35396260,35396398-35396549,35396694-35396938,
           35397044-35398350
          Length = 599

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
 Frame = -3

Query: 500 LACFLVCLLAGARSHRTCSVIGTTSIKR----HDTRTLSSWPPVTTFPILRTEWKAVDVA 333
           L+C ++ LLAGA  H    ++  T +KR    H+  T++   P  T  +   +   ++V 
Sbjct: 13  LSCSVLALLAGAEVHHHEFIVQETPVKRLCKTHNVITVNGQLPGPTLEVREGDTVVINVV 72

Query: 332 QNTSSRILL 306
            +    + +
Sbjct: 73  NHAQYNVTI 81


>01_06_0475 + 29610268-29610711
          Length = 147

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 268 SPFSSNPSLATKGSTSKLTLRHSPLSFSPD 179
           SP SS+P      S+++ TL HSP S SPD
Sbjct: 54  SPMSSSPP---SRSSTRATLTHSPSSASPD 80


>06_03_0913 +
           25913231-25913609,25913702-25913775,25914400-25914540,
           25914834-25914946,25915359-25915491,25916213-25916351,
           25916428-25916527,25916906-25916963,25917122-25917199,
           25917278-25917376,25917657-25917735,25917826-25917974,
           25918529-25918834,25918994-25919032
          Length = 628

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 528 SEVVVTCKIRRPVRS--CLAMRRC 593
           S++ +TCKI RPVRS  C    RC
Sbjct: 398 SQLCITCKIVRPVRSKHCSTCDRC 421


>02_01_0624 -
           4681834-4682298,4684250-4684398,4684479-4684557,
           4684827-4684925,4685004-4685081,4685231-4685288,
           4685814-4685913,4686000-4686008,4686105-4686138,
           4686729-4686911,4687099-4687126,4687268-4687380,
           4688253-4688459,4689212-4689511
          Length = 633

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +3

Query: 528 SEVVVTCKIRRPVRS--CLAMRRC 593
           S++ +TCKI RPVRS  C    RC
Sbjct: 363 SQLCITCKIVRPVRSKHCSTCDRC 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,073,432
Number of Sequences: 37544
Number of extensions: 363013
Number of successful extensions: 935
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)