Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_M02
         (945 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    30   2.8  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   3.7  
AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical ...    29   4.8  
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    29   4.8  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    29   6.4  
Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily a...    28   8.5  
AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily a...    28   8.5  

>Z83219-3|CAD57687.1|  965|Caenorhabditis elegans Hypothetical
           protein C31C9.6 protein.
          Length = 965

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
 Frame = +2

Query: 446 PXXIXPGXPPPPXXXS-QPSPXPXKLSXTVXPPPXXXAXXARSRRPAKXXXAPA 604
           P    P  PPP    +  PSP P ++S +  PPP        S  P      PA
Sbjct: 460 PTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPA 513



 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = +3

Query: 447 PXXSDQXDPXPXXSXPNXLPXXXSXRXXSXPPPPXXXPXPDXAAPQSXSXXP 602
           P  + +  P P    PN  P          PPPP   P P  A P S    P
Sbjct: 459 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPP--PPLPPIATPSSVPPPP 508



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +1

Query: 415 PGRCAXPXXPXXXHXTRXTPXPXXPLPTXSRPXQAXXHXPPPP 543
           P R   P           +P P  PLP  + P       PPPP
Sbjct: 470 PSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPP 512


>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/52 (30%), Positives = 18/52 (34%)
 Frame = +3

Query: 447 PXXSDQXDPXPXXSXPNXLPXXXSXRXXSXPPPPXXXPXPDXAAPQSXSXXP 602
           P  + +  P P    PN  P          PPPP   P P  A P S    P
Sbjct: 466 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPP--PPLPPIATPSSVPPPP 515



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 470 PPPPXXXSQPSPXPXKLSXTVXPPP 544
           PPPP     PSP P     +  PPP
Sbjct: 474 PPPPSRIPNPSPSPQPAEVSKSPPP 498



 Score = 29.1 bits (62), Expect = 4.8
 Identities = 13/43 (30%), Positives = 15/43 (34%)
 Frame = +1

Query: 415 PGRCAXPXXPXXXHXTRXTPXPXXPLPTXSRPXQAXXHXPPPP 543
           P R   P           +P P  PLP  + P       PPPP
Sbjct: 477 PSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPP 519


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 461 PGXPPPPXXXSQPSPXPXKLSXTVXPPP 544
           P  PPPP     P P P     T  PPP
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPP 289


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 461 PGXPPPPXXXSQPSPXPXKLSXTVXPPP 544
           P  PPPP     P P P     T  PPP
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPP 299


>AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical
           protein H28G03.2c protein.
          Length = 275

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 446 PXXIXPGXPPPPXXXSQPSPXPXKLSXTVXPPP 544
           P  + P  PPP    + P   P  +  T  PPP
Sbjct: 131 PFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPPP 163


>AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical
           protein H28G03.2b protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 446 PXXIXPGXPPPPXXXSQPSPXPXKLSXTVXPPP 544
           P  + P  PPP    + P   P  +  T  PPP
Sbjct: 154 PFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPPP 186


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 11/33 (33%), Positives = 14/33 (42%)
 Frame = +2

Query: 446 PXXIXPGXPPPPXXXSQPSPXPXKLSXTVXPPP 544
           P  + P  PPP    + P   P  +  T  PPP
Sbjct: 404 PFSVPPSVPPPTSSAAAPIVPPPPVQSTAQPPP 436


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 470 PPPPXXXSQPSPXPXKLSXTVXPPP 544
           PPPP     P P P +   ++ PPP
Sbjct: 21  PPPPSPRRAPPPPPHRKPASLSPPP 45


>Z68338-7|CAA92756.2|  866|Caenorhabditis elegans Hypothetical
           protein T24B8.4 protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +2

Query: 446 PXXIXPGXPPPPXXXSQPSPXPXKLSXTVXPPP 544
           P  +  G PPPP     P P P      V P P
Sbjct: 97  PPPMMGGIPPPPPMFGAPPPPPPPSGLGVAPQP 129


>AF098500-3|ABD94103.1|  774|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform b protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +2

Query: 461 PGXPPPPXXXS----QPSPXPXKLSXTVXPPP 544
           P  PPPP   S    +P+P P     T+ PPP
Sbjct: 73  PPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPP 104


>AF098500-2|AAC67399.2|  996|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 343, isoform a protein.
          Length = 996

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 4/32 (12%)
 Frame = +2

Query: 461 PGXPPPPXXXS----QPSPXPXKLSXTVXPPP 544
           P  PPPP   S    +P+P P     T+ PPP
Sbjct: 295 PPLPPPPLPLSNPPAKPTPPPPPPKPTIRPPP 326


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,725,017
Number of Sequences: 27780
Number of extensions: 137862
Number of successful extensions: 1101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2444174194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)