Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_L21
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    27   0.20 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    27   0.20 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    27   0.20 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   1.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   7.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 524 NADYWSVVLPKMFPIEQPSARLNEDVSFQAGN 429
           NA  W +   K  P+ Q   R++ D  ++ GN
Sbjct: 492 NAGIWMIDFAKTLPLPQHLPRIHHDAEWKVGN 523


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 524 NADYWSVVLPKMFPIEQPSARLNEDVSFQAGN 429
           NA  W +   K  P+ Q   R++ D  ++ GN
Sbjct: 407 NAGIWMIDFAKTLPLPQHLPRIHHDAEWKVGN 438


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 27.1 bits (57), Expect = 0.20
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -1

Query: 524 NADYWSVVLPKMFPIEQPSARLNEDVSFQAGN 429
           NA  W +   K  P+ Q   R++ D  ++ GN
Sbjct: 726 NAGIWMIDFAKTLPLPQHLPRIHHDAEWKVGN 757


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 18/74 (24%), Positives = 28/74 (37%)
 Frame = -3

Query: 459  QRGRELPGGEQHQGRHQHERARQNHCVEGRGGHSRAHGLRAVRHAEGAGQQQRSLPVHTE 280
            QR   +   +Q Q + Q ++ +Q    + +  H         R  EG G         T 
Sbjct: 1202 QRNAAMVQQQQQQQQQQQQQQQQQQQQQQQQQHQ-------AREREGVGAGIAETSAGTS 1254

Query: 279  RARQGLQVGSVPRD 238
             +R   Q+  VPRD
Sbjct: 1255 NSRGAAQMSKVPRD 1268


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -1

Query: 254 DPYPEIVVTEGIHKSTLY--AALVGPKTAEIILSVVL 150
           +PYP+IV    + + TL+    L+ P      LSV++
Sbjct: 221 EPYPDIVFNITLRRKTLFYTVNLIIPCVGISFLSVLV 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,328
Number of Sequences: 438
Number of extensions: 4254
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)