Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP06_T7_L19
         (923 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.70 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    28   2.1  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.70
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = +1

Query: 454 PXXXPPXXLXPXPXXXXXX-SPXYPLXXXXXPXXSPXPISXSPXPXPPPXPXXXS 615
           P   PP  + P P        P  P+     P   P  ++ +  P PPP P   S
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVS 786



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/34 (35%), Positives = 13/34 (38%)
 Frame = +1

Query: 544 PXXSPXPISXSPXPXPPPXPXXXSWPPXXXXXSP 645
           P   P PI   P P PPP     + PP      P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/70 (25%), Positives = 21/70 (30%)
 Frame = +1

Query: 436 PXPXXXPXXXPPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPPPXPXXXS 615
           P P   P   PP      P      +P  P      P   P P   +  P  PP P    
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLP---AGMPAAPPLPPAAP 474

Query: 616 WPPXXXXXSP 645
            PP     +P
Sbjct: 475 APPPAPAPAP 484


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
 Frame = +1

Query: 544 PXXSPXPISXSPXPXPPPXPXXXS-WPP 624
           P  +P P+S  P   PPP P   S W P
Sbjct: 140 PLHNPLPVSCQPVLRPPPVPQVPSHWYP 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,094,969
Number of Sequences: 5004
Number of extensions: 9044
Number of successful extensions: 40
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 467341524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)