Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP06_T7_L19
(923 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 32 0.67
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 31 1.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 31 1.2
AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical... 31 1.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.7
U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body prot... 29 4.7
U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body prot... 29 4.7
U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body prot... 29 4.7
J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein ( C.ele... 29 4.7
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 29 4.7
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 29 4.7
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 29 4.7
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 29 4.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 4.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 4.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 4.7
AC025716-14|AAK39603.1| 227|Caenorhabditis elegans Hypothetical... 29 4.7
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 6.2
AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical ... 28 8.2
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 31.9 bits (69), Expect = 0.67
Identities = 19/60 (31%), Positives = 19/60 (31%)
Frame = +1
Query: 466 PPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPPPXPXXXSWPPXXXXXSP 645
PP P P P P P P P P P PPP P PP SP
Sbjct: 28 PPCPPPPPPMCAPPPLPCPP-PPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/58 (29%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Frame = +1
Query: 454 PXXXPPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPX-PPPXPXXXSWPP 624
P PP + P P P P P P P P PPP P S+ P
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 514 PXYPLXXXXXPXXSPXPISXSPXPXPPPXPXXXSWPP 624
P P P P P + P PPP P WPP
Sbjct: 262 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPP 298
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = +1
Query: 466 PPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPPPXPXXXSWPPXXXXXSP 645
PP + P P P P P P P S P PPP P PP P
Sbjct: 261 PP--VPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 318
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 31.1 bits (67), Expect = 1.2
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 514 PXYPLXXXXXPXXSPXPISXSPXPXPPPXPXXXSWPP 624
P P P P P + P PPP P WPP
Sbjct: 272 PVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPP 308
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/60 (30%), Positives = 19/60 (31%)
Frame = +1
Query: 466 PPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPPPXPXXXSWPPXXXXXSP 645
PP + P P P P P P P S P PPP P PP P
Sbjct: 271 PP--VPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPP 328
>AL117204-23|CAB55137.1| 285|Caenorhabditis elegans Hypothetical
protein Y116A8C.35 protein.
Length = 285
Score = 30.7 bits (66), Expect = 1.5
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = -1
Query: 602 GXGGGXGXGEXEXGXGDXXGWXXXXRG*XGEXXXXXXGXGXXXXGGXXXGXXXGXG 435
G GG G G G G GW G + G G GG G G G
Sbjct: 213 GGSGGGGGGGGGGGYGSGGGWGGGGGGRDRDRGGWGGGGGGRGYGGGGGGGGYGYG 268
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +1
Query: 436 PXPXXXPXXXPPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPPPXP 603
P P P PP P P P P+ P P P P P PPP P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLP--PISGGPPPP--PPPPGGCPPPPPPPPP 777
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +1
Query: 436 PXPXXXPXXXPPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPPPXP 603
P P P PP P P P P+ P P P P P PPP P
Sbjct: 726 PPPPPPPGGLPPITGGPPPPPPPGGLP--PISGGPPPP--PPPPGGCPPPPPPPPP 777
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.7
Identities = 18/56 (32%), Positives = 19/56 (33%)
Frame = +1
Query: 436 PXPXXXPXXXPPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPPPXP 603
P P P PP P P P P+ P P P P P PPP P
Sbjct: 309 PPPPPPPGGLPPITGGPPPPPPPGGLP--PISGGPPPP--PPPPGGCPPPPPPPPP 360
>U40802-3|AAM81105.1| 369|Caenorhabditis elegans Dense body protein
1, isoform b protein.
Length = 369
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 544 PXXSPXPISXSPXPXPPPXP 603
P P P+ SP P PPP P
Sbjct: 147 PPRPPPPVELSPPPRPPPPP 166
>U40802-2|AAM81104.1| 1010|Caenorhabditis elegans Dense body protein
1, isoform a protein.
Length = 1010
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 544 PXXSPXPISXSPXPXPPPXP 603
P P P+ SP P PPP P
Sbjct: 788 PPRPPPPVELSPPPRPPPPP 807
>U40802-1|AAM81106.1| 999|Caenorhabditis elegans Dense body protein
1, isoform c protein.
Length = 999
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 544 PXXSPXPISXSPXPXPPPXP 603
P P P+ SP P PPP P
Sbjct: 788 PPRPPPPVELSPPPRPPPPP 807
>J04804-1|AAA28002.1| 1010|Caenorhabditis elegans protein (
C.elegans vinculin (deb-1) gene, complete cds. ).
Length = 1010
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 544 PXXSPXPISXSPXPXPPPXP 603
P P P+ SP P PPP P
Sbjct: 788 PPRPPPPVELSPPPRPPPPP 807
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 454 PXXXPPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPP 594
P PP P P P P P P PI SP P PP
Sbjct: 69 PTESPPLPPPPLPLSNPPAKPTPP-PPPPKPTIRPPPIPASPPPRPP 114
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 29.1 bits (62), Expect = 4.7
Identities = 16/47 (34%), Positives = 16/47 (34%)
Frame = +1
Query: 454 PXXXPPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPP 594
P PP P P P P P P PI SP P PP
Sbjct: 291 PTESPPLPPPPLPLSNPPAKPTPP-PPPPKPTIRPPPIPASPPPRPP 336
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/73 (27%), Positives = 23/73 (31%)
Frame = -1
Query: 623 GGXEXXXGXGGGXGXGEXEXGXGDXXGWXXXXRG*XGEXXXXXXGXGXXXXGGXXXGXXX 444
GG + G GG G G + G G GW + G G G GG
Sbjct: 208 GGGQGGYG-GGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQG 266
Query: 443 GXGXXXXXXGXRG 405
G G G G
Sbjct: 267 GWGGPQQGGGGGG 279
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 29.1 bits (62), Expect = 4.7
Identities = 20/73 (27%), Positives = 23/73 (31%)
Frame = -1
Query: 623 GGXEXXXGXGGGXGXGEXEXGXGDXXGWXXXXRG*XGEXXXXXXGXGXXXXGGXXXGXXX 444
GG + G GG G G + G G GW + G G G GG
Sbjct: 246 GGGQGGYG-GGNYGGGWGQQGGGGQGGWGGPQQQQGGGGWGQQGGGGQGGWGGPQQQQQG 304
Query: 443 GXGXXXXXXGXRG 405
G G G G
Sbjct: 305 GWGGPQQGGGGGG 317
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Frame = +1
Query: 466 PPXXLXPXPXXXXXXSPXYPLXXXXXPXXS----PXPISXSPXPXPPP--XPXXXSWPPX 627
PP P SP P P + P P + SP P PPP P S PP
Sbjct: 256 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 315
Query: 628 XXXXSP 645
SP
Sbjct: 316 QAGGSP 321
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Frame = +1
Query: 466 PPXXLXPXPXXXXXXSPXYPLXXXXXPXXS----PXPISXSPXPXPPP--XPXXXSWPPX 627
PP P SP P P + P P + SP P PPP P S PP
Sbjct: 277 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 336
Query: 628 XXXXSP 645
SP
Sbjct: 337 QAGGSP 342
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 4.7
Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 6/66 (9%)
Frame = +1
Query: 466 PPXXLXPXPXXXXXXSPXYPLXXXXXPXXS----PXPISXSPXPXPPP--XPXXXSWPPX 627
PP P SP P P + P P + SP P PPP P S PP
Sbjct: 262 PPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPPPPPPRGSPPTGSLPPP 321
Query: 628 XXXXSP 645
SP
Sbjct: 322 QAGGSP 327
>AC025716-14|AAK39603.1| 227|Caenorhabditis elegans Hypothetical
protein Y39G10AR.16 protein.
Length = 227
Score = 29.1 bits (62), Expect = 4.7
Identities = 11/30 (36%), Positives = 14/30 (46%)
Frame = +1
Query: 514 PXYPLXXXXXPXXSPXPISXSPXPXPPPXP 603
P P P +P P + +P P PPP P
Sbjct: 156 PEKPKVEEPAPAPAPAPAAVAPAPPPPPEP 185
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 28.7 bits (61), Expect = 6.2
Identities = 16/60 (26%), Positives = 17/60 (28%)
Frame = +1
Query: 436 PXPXXXPXXXPPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPPPXPXXXS 615
P P PP L P P + P P P P P PP P S
Sbjct: 318 PTTFILPPPPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQTPSASS 377
>AL032646-7|CAA21680.1| 485|Caenorhabditis elegans Hypothetical
protein Y54E2A.8 protein.
Length = 485
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/63 (31%), Positives = 22/63 (34%)
Frame = +1
Query: 436 PXPXXXPXXXPPXXLXPXPXXXXXXSPXYPLXXXXXPXXSPXPISXSPXPXPPPXPXXXS 615
P P P PP P P P PL +P PI +P P PPP
Sbjct: 157 PIPTPVPILEPPPPPPPVP-------PLSPLYKVLEIPATPSPIFVAPLP-PPPAYTTPD 208
Query: 616 WPP 624
PP
Sbjct: 209 VPP 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,803,426
Number of Sequences: 27780
Number of extensions: 81047
Number of successful extensions: 568
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2370744068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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